Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0322.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683...    30   1.2  
10_01_0102 - 1244294-1245478                                           29   2.8  
01_05_0071 + 17842918-17843222,17843391-17843646,17844257-178445...    28   6.5  

>11_04_0351 +
           16666398-16666532,16666911-16667048,16667398-16668306,
           16668383-16668511,16668774-16668996,16669085-16669231,
           16669332-16669573,16669660-16669689,16669784-16669865,
           16669968-16670128,16670775-16670898,16671206-16671414
          Length = 842

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 243 VSFISTCRIFRSSCKN*RTIRHVFNIAAFCMVMYVFSAMSNIFKDWSRC 389
           +S I+  R+F S  +     R V N     MVM +F A+S +   WS C
Sbjct: 784 ISGITCRRLFTSWTQWMEKCRRVLNRGQMWMVMLIFPAISGLILVWSIC 832


>10_01_0102 - 1244294-1245478
          Length = 394

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/69 (20%), Positives = 30/69 (43%)
 Frame = -3

Query: 506 NSLKSX*IYRIKGRNFKNLXNEQSLHCTSGAIQYRRYT*TPTPIFKNIRHSRKHVHDHAK 327
           ++L+   ++    +N  +L N   + C+   I++ R    P P+  NI      +H   +
Sbjct: 8   STLRISSVHMSSWKNTTSLCNWTGIMCSRSVIRHGRRHRLPWPVVTNISLPASGIHGQLR 67

Query: 326 SRNIKHMPY 300
             +   +PY
Sbjct: 68  ELDFSSLPY 76


>01_05_0071 +
           17842918-17843222,17843391-17843646,17844257-17844520,
           17844632-17845143,17845222-17845392,17845475-17845763,
           17845849-17845959
          Length = 635

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 195 SRNTIQKKHNNINTGTETSLPTKPRQIIDR 106
           +RN I K+   I    +  LPT PR+I+ R
Sbjct: 23  TRNKIPKERFRITAVDQVGLPTSPRKILSR 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,358,962
Number of Sequences: 37544
Number of extensions: 225402
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)