Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0322.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)                  41   9e-04
SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4)               38   0.005
SB_28489| Best HMM Match : SAB (HMM E-Value=6)                         36   0.019
SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2)                  34   0.076
SB_48677| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                28   5.0  
SB_29780| Best HMM Match : VWA (HMM E-Value=2.1e-05)                   28   6.6  
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       28   6.6  
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)
          Length = 307

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 154 WDRDIITDKTTTNNRPDITLTLKDRKITYLIDIAIPNSENIRKKYTEKIKK 2
           WD  I TD+     RPDI +  +      +IDIA+P   N+ +K  EK+ K
Sbjct: 254 WDVTIQTDREIEARRPDIVIVNRKEGECIVIDIAVPGDANVGEKEKEKVLK 304


>SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4)
          Length = 202

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = -1

Query: 550 LIXIAVPNTNNXQKPIA*KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPK 389
           +I IAVP   N  +    KV KY +++ EI R+W + K  +VP+V+ + G   K
Sbjct: 149 VIDIAVPGDANVAEKEKEKVLKYQDIRREIARLWDI-KTCVVPIVVGALGTSVK 201



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 154 WDRDIITDKTTTNNRPDITLTLKDRKITYLIDIAIPNSENIRKKYTEKIKK 2
           W    + D+     RPDI +  +      +IDIA+P   N+ +K  EK+ K
Sbjct: 120 WKTKPLHDREIQARRPDIVIVNRKEGECIVIDIAVPGDANVAEKEKEKVLK 170


>SB_28489| Best HMM Match : SAB (HMM E-Value=6)
          Length = 149

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 496 KVNKYTELKEEILRIWXMNKVYIVPLVLSSTGVIPKHLL 380
           K+  Y++LK E+  +W    V I+P+V+ + G +P  L+
Sbjct: 69  KIESYSDLKRELKLLWKRRVVQILPIVIVAVGTVPAGLM 107


>SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2)
          Length = 298

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 154 WDRDIITDKTTTNNRPDITLTLKDRKITYLIDIAIPNSENIRKK 23
           W   I TD+     RPDI +  +      +IDIA+P   N+ KK
Sbjct: 255 WGVTIQTDREIQARRPDIVIVNRKEGECIVIDIAVPGDANVGKK 298


>SB_48677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 250 SFLLAEY-LGLPARIDGLYGMCLILRLFAWSCT 345
           S LL EY L L  RI     + L LRL  W C+
Sbjct: 99  SLLLVEYELDLATRITASLALTLALRLVMWGCS 131


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 409 STGVIPKHL--LQSLKILDIAENTYMTMQKAAILNTCRIVRQFLQEDLNILQVEMKLTWL 236
           S G  P+ +  L++    D A NTY+ M +A I++  ++VR  + +   +  +   LT  
Sbjct: 164 SKGANPQEVSSLENAMGYDAANNTYVDMIQAGIIDPTKVVRTAITDAAGVASL---LTTA 220

Query: 235 RPVIFIIPK 209
             VI   PK
Sbjct: 221 ETVIVEAPK 229


>SB_29780| Best HMM Match : VWA (HMM E-Value=2.1e-05)
          Length = 225

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 383 TPIFKNIRHSRKHVHDHAKSRNIKHMPYSPSILAGRPKYSASR 255
           TP      H  K  H+  K+  +  + YS  + AGRP++S  R
Sbjct: 27  TPFIGPKNHPNKEKHNALKALILLRLWYSIKMRAGRPRHSEIR 69


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 347 HVHDHAKSRNIKHMPYSPSILAGRPKYSASRNEAHLA*ARDLHYTEIS*VFRETQYKRNI 168
           H   +  +RN+ H+   P+ L   P Y+ +RN  HL     +H T +      T Y RN+
Sbjct: 134 HAPYYTYARNLLHLRTHPTTLMHAPYYTYARNLLHLR----MHPTTLMHAPYYT-YARNL 188

Query: 167 IILILGP 147
           + L   P
Sbjct: 189 LHLCTHP 195


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 388 HLLQSLKILDIAENTYMTMQKAAILNTCRIVRQFLQE 278
           H+  +  + DI+ N Y  ++  A   +CR V Q LQE
Sbjct: 666 HIRFNQAVGDISANVYTMVETVAYFESCRHVLQGLQE 702


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,335
Number of Sequences: 59808
Number of extensions: 286726
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)