Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0322.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical ...    31   0.82 
AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical ...    31   0.82 
U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z92824-5|CAB07308.1|  431|Caenorhabditis elegans B0413.4 protein.      29   3.3  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical...    28   5.8  
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/41 (31%), Positives = 28/41 (68%)
 Frame = -1

Query: 469 EEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAEN 347
           E+++ +  ++ +Y VPL+L   GV+ + + Q L++ +I+EN
Sbjct: 245 EQVVGVHDVSNIYKVPLLLQQQGVL-EAITQRLRLSEISEN 284


>AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/41 (31%), Positives = 28/41 (68%)
 Frame = -1

Query: 469 EEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAEN 347
           E+++ +  ++ +Y VPL+L   GV+ + + Q L++ +I+EN
Sbjct: 245 EQVVGVHDVSNIYKVPLLLQQQGVL-EAITQRLRLSEISEN 284


>U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical
           protein C32B5.5 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 139 ITDKTTTNNRPDITLTLKDRKITYLIDI 56
           ITD + T NR    +T+ DRK+ Y  DI
Sbjct: 50  ITDNSVTVNRVTCQITVTDRKVDYQFDI 77


>Z92824-5|CAB07308.1|  431|Caenorhabditis elegans B0413.4 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 183 LCFSKYLRYFGIMKITGLSQVSFISTCRIFRSSCKN*RTIRHVFNIAAFCMVMYVFSAMS 362
           +CF  +LR+FG      +   ++IS   IF S       I       A+   +Y    +S
Sbjct: 8   ICFFDFLRFFGFFVWKIMQNTNYISXFLIFFSHL---LLIXCGTXXXAYSAKIY----LS 60

Query: 363 NIFKDWSRCL-GITPVLD 413
           N+ K++ +CL G  P+LD
Sbjct: 61  NVCKNFQKCLDGPRPLLD 78


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
           protein C46A5.4 protein.
          Length = 1432

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 338 DHAKSRNIKHMPYSPSILAGRPKYS-ASRNEAHLA*ARDLHYTEIS*VFRETQ 183
           D  +S+N+K +PYS S+    PK S   R +A++       Y ++S ++  T+
Sbjct: 201 DTLQSKNVKCLPYSRSLPVPNPKCSFGQRQQANMV----TSYLDLSQIYGSTE 249


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 374 FKNIRHSRKHVHDHAKSRNIKHMPYS 297
           FK   +S+ H  +H K++N K  PYS
Sbjct: 139 FKQDHNSKNHQSNHQKTKNKKSNPYS 164


>AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical
           protein R09B5.12 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 365 IRHSRKHVHDHAKSRNIKHMPYSPSILAGRPKYSASRN 252
           ++ SRK+V+D     N+ H  +SP ++ G   Y    N
Sbjct: 270 LKGSRKYVNDEFIYHNLHHCGFSPKLMIGINFYGIELN 307


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 472 KEEILRIWXMNKVYIVPLVLSSTGVIPKHLLQSLKILDIAEN 347
           K E+  I+   K+Y  P +L S  V    L Q+++++ +A+N
Sbjct: 610 KSEVESIFECWKMYWTPKILRSNRVFRFSLHQAIEVITVADN 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,501,708
Number of Sequences: 27780
Number of extensions: 223437
Number of successful extensions: 577
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)