Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0322.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    32   0.33 
At5g38840.1 68418.m04698 forkhead-associated domain-containing p...    27   7.2  
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont...    27   7.2  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    27   9.5  
At3g11080.1 68416.m01339 disease resistance family protein conta...    27   9.5  
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ...    27   9.5  
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100...    27   9.5  

>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = -1

Query: 271 NILQVEMKLTWLRPVIFIIPKYLKYFEKHNTKET**Y*YWDRDIITDKTTTNNRPDITLT 92
           +I  V++K  WL+PV+  I + +K++++H          W+RD++  K  T  +    L 
Sbjct: 637 DIESVKIKAGWLKPVLEEIVEAVKHYDEHKMSVV-EKEVWERDVLLAKQETEKQVK-ELG 694

Query: 91  LKDRKI 74
            K++KI
Sbjct: 695 EKEKKI 700


>At5g38840.1 68418.m04698 forkhead-associated domain-containing
           protein / FHA domain-containing protein related to
           adaptor protein kanadaptin [Homo sapiens]
           gi|13562130|gb|AAK29177
          Length = 735

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 142 IITDKTTTNNRPDITLTLKDRKITYLIDIAIPNSENIRKK 23
           ++ DKT    +   TL  +  +I YL+ IA P  E ++K+
Sbjct: 456 LVQDKTAQIQQELSTLQSELSRILYLLKIADPTGEEVKKR 495


>At5g06940.1 68418.m00784 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 872

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 406 TGVIPKHL--LQSLKILDIAENTYMTMQKAAILNTCRIVRQFL 284
           TG++P  +  L  L +LD++EN+Y+  +  + L     + Q L
Sbjct: 184 TGIVPPAIGKLSELVVLDLSENSYLVSEIPSFLGKLDKLEQLL 226


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 389 TPTPIFKNIRHSRKHVHDHAKSRNIKHMP-YSPSILAGRPKYSASRNEAH 243
           +P+P+  +  HS  H   H+ +    H P ++PS     P ++ S + AH
Sbjct: 213 SPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPS---HSPAHAPSHSPAH 259


>At3g11080.1 68416.m01339 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 943

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 406 TGVIPKHLLQSLKILDIAEN 347
           +G +PKH+ +SL+ LD+  N
Sbjct: 607 SGGLPKHIFESLRSLDVGHN 626


>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
           protein, putative (SR1) identical to partial sequence of
           ethylene-induced calmodulin-binding protein GI:11545505
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
           motif, and PF00023: Ankyrin repeat
          Length = 1032

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 151 DRDIITDKTTTNNRPDITLTLKDRK 77
           D  I+ DK+ T N P +T  LK+RK
Sbjct: 259 DSSIMVDKSKTINSPGVTNGLKNRK 283


>At1g28400.1 68414.m03492 expressed protein similar to E6
           (GI:1000090) [Gossypium barbadense]
          Length = 335

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 143 HHYRQNHDK**TGYYTNTKR*KNYILNRY 57
           H+YR++H K   GYY++     NY    Y
Sbjct: 265 HYYRKSHSKSPAGYYSSPATETNYEQQSY 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,515,893
Number of Sequences: 28952
Number of extensions: 197307
Number of successful extensions: 492
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)