Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0321.Seq
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   3.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   4.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.6  

>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 328 FKNGRHRFESNLLIYVIDNNY-YNQKNKFLNVNN 426
           +KN       +LL +++D+++ Y QK K L V++
Sbjct: 171 YKNANDLLTGSLLSFIVDDSFSYEQKKKLLCVDS 204


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 336 ILKI-IRDLVINRHHAFLFYKSIKYCFFFYELRIMHVI 226
           +LK  +R+  I   +  + YK ++ CF  + + I HV+
Sbjct: 696 VLKFFVRERSITNKYEDILYKILEACFMQFRIPIQHVL 733


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 487  NMYVIFTVFSYSE*VYLLFECYLHS----KTCFF 398
            N Y+  T  S  E +YLLF+  L++    +TCFF
Sbjct: 1349 NKYLFETGKSSQEEIYLLFKTLLNNLPILRTCFF 1382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,523
Number of Sequences: 5004
Number of extensions: 39228
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)