Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0321.Seq
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655...    27   8.9  

>04_04_1079 -
           30663919-30665044,30665143-30665298,30665405-30665563,
           30665640-30665770,30666230-30666315,30666607-30666673,
           30666944-30667023,30667173-30667260,30667380-30667428,
           30667516-30667608,30667725-30667808,30667986-30668044,
           30668293-30668327,30668416-30668718,30669111-30669275,
           30669701-30669780,30670932-30671003,30671143-30671234,
           30671359-30671433,30671552-30671688,30671763-30671890,
           30671942-30672033,30672473-30672808
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -3

Query: 105 SNVKKTIILPFQFKTLSGCYIILDVSILLQIVKKK 1
           SN+  ++++ F+F   S CY++ +  I+L+ ++ K
Sbjct: 430 SNLSISLMIQFRFSDYSICYVLREEGIILKDLESK 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,632
Number of Sequences: 37544
Number of extensions: 166959
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)