Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0321.Seq
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79600-3|CAB01876.1|  260|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin...    27   8.0  

>Z79600-3|CAB01876.1|  260|Caenorhabditis elegans Hypothetical
           protein F59C6.5 protein.
          Length = 260

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 430 ECYLHSKTCFFGYNNYYRLHKSISYF 353
           EC ++ K CF+  N  YRL K +  F
Sbjct: 80  ECGVNDKACFYEANEQYRLDKMVDGF 105


>AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin
           protein 2 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 418 HSKTCFFGYNNY-YRLHKSISYF 353
           H  +C++ YNNY Y  H+ +  F
Sbjct: 150 HEDSCYYNYNNYCYTFHRDLYSF 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,468
Number of Sequences: 27780
Number of extensions: 206080
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)