Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0320.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    30   0.22 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   1.6  
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    27   1.6  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   6.3  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   6.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.4  

>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 363 HYFNFKQTYEHLFLPLKNEKRCKYIKNSNAFCYCFKVY 250
           HYF  ++T+   + P K      ++ NSN   YC K +
Sbjct: 96  HYFGSEETFLWKYFPPKKYVHYPFVGNSNFVAYCTKSF 133


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 165 RSRGKPPRIKITRKQRTEDE 224
           +SR K P+ +I R+QR EDE
Sbjct: 116 KSRSKTPKREIARRQRDEDE 135


>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 437 DHNRPLLGKYVVKITILLLFDINKNITLILNKHTSISFY 321
           DH R  +GK +V   I L F +N    ++    +++ FY
Sbjct: 52  DHQRKAIGKLMVLTLIKLAFSLNSYKVILDCSDSNVGFY 90


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 520 LLFIRQNLSFLRGFFFVANWH 582
           + FI Q L  LRG  F+ +WH
Sbjct: 134 VFFIAQCLHILRGTKFIIDWH 154


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 422 LLGKYVVKITILLLFDINKNITLILNKHTSISFY 321
           +LG +   + I+ +FD    +T  + K  S+ FY
Sbjct: 508 ILGSFTAILVIITVFDPELMVTFEITKDRSVLFY 541


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 354  NFKQTYEHLFLPL-KNEKRC 298
            NF++ YE++ LP  KNE  C
Sbjct: 1146 NFRRLYEYMLLPSEKNESSC 1165


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 137 WHWLRRRRGCPSPVSCPNRRCCR 69
           + ++ R R CPS   C + RC R
Sbjct: 404 YSYICRSRSCPSKYQCYSCRCAR 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,041
Number of Sequences: 5004
Number of extensions: 41241
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)