Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0320.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    29   2.1  
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31...    29   2.8  
10_01_0116 + 1443703-1444112,1444789-1444867,1444928-1444948           27   8.6  
03_05_0799 + 27809301-27811550                                         27   8.6  

>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -2

Query: 579 PVSNEKKTPEK*EILSYKKKLKRESNFGKQFLKGNIDGARKRSNAGRRSQQATAREIRGK 400
           P   EK T E  +    KKK K++S   ++    + DG +K+    + S++       G+
Sbjct: 469 PAPAEKTTKEDGDQEGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEPPVATTEGE 528


>04_01_0021 +
           311914-312399,314218-314310,314391-314672,314754-314826,
           315273-315405,315476-315629,315763-315843,316174-316296,
           316629-316787,316862-316996,317159-317254,317416-317910,
           318651-318722,319496-319537
          Length = 807

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 149 WQPSWHWLRRRRGCPSPVSCPNRRCCRTWHRQRKLRPR 36
           W+ S     RRR   S   C +   CR  H + +LRPR
Sbjct: 52  WKTSLCSFFRRRAASSADGCSHGDSCRYAHSEEELRPR 89


>10_01_0116 + 1443703-1444112,1444789-1444867,1444928-1444948
          Length = 169

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 221 VLSALFPRDFDSWRLSSRSYRLFCWQPSWH 132
           +L A  P     W +S+  Y   CW   WH
Sbjct: 106 ILLAPSPLHHQRWMISAHIYSEICWALHWH 135


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 152 CW-QPSWHWLRRRRGCPSPVSCPNRRCCRTWHRQRKLRPRYRTLSS 18
           CW  P+ +   R R C    SC NRR C   H   +LRP Y +  S
Sbjct: 335 CWLHPAQY---RTRLCKDGTSC-NRRVCFFAHTTDELRPLYVSTGS 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,820,558
Number of Sequences: 37544
Number of extensions: 251392
Number of successful extensions: 774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)