Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0320.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)                    44   7e-05
SB_48117| Best HMM Match : LANC_like (HMM E-Value=2.3)                 42   5e-04
SB_22205| Best HMM Match : DUF805 (HMM E-Value=7.7)                    42   5e-04
SB_12292| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.076
SB_7041| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.076
SB_42521| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7)                   32   0.40 
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            30   1.2  
SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1)                   29   2.2  
SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2)                    29   2.2  
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)                 29   2.2  
SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)                      29   2.9  
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   28   6.6  
SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)            27   8.7  

>SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)
          Length = 366

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 14  QWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           +WR VFYI G +Y   A FY +F SG +Q W
Sbjct: 313 EWRIVFYIGGAIYAAGAVFYAVFASGEKQTW 343


>SB_48117| Best HMM Match : LANC_like (HMM E-Value=2.3)
          Length = 440

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 2   PTQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           PT+ QW+KV+YI  G+YV  A  +   G+ + Q W
Sbjct: 351 PTRDQWQKVYYIGAGIYVFGAVAFAALGTSKEQPW 385


>SB_22205| Best HMM Match : DUF805 (HMM E-Value=7.7)
          Length = 347

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 2   PTQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           PT+ QW+KV+YI  G+YV  A  +   G+ + Q W
Sbjct: 175 PTRDQWQKVYYIGAGIYVFGAVAFAALGTSKEQPW 209


>SB_12292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   QAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           Q +WR VF+I   VYVV    Y+   SG RQ W
Sbjct: 28  QEEWRIVFWITMIVYVVAVIGYSALCSGYRQPW 60


>SB_7041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 32  YIAGGVYVVCATFYNIFGSGRRQDW 106
           YI G +Y   A FY +F SG +Q W
Sbjct: 10  YIGGAIYAAGAVFYAVFASGEKQTW 34


>SB_42521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 2   PTQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           P +A W+ VF+I+ G+YV+ A  +     G  + W
Sbjct: 1   PDRAHWQIVFFISAGLYVIGAISFVTLSKGSERRW 35


>SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7)
          Length = 104

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   TQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           T  +WR VF+I   VY+V    + +  SG +Q W
Sbjct: 1   TAKEWRVVFWITFIVYIVGIVLFGLLVSGDKQKW 34


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  QWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           +WR VF+I   VY+V A  +  F SG  Q W
Sbjct: 607 EWRTVFWITFFVYLVGAIVFCTFMSGDLQPW 637


>SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1)
          Length = 149

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   TQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           T  +WR VF+    VY++ AT + +  S  RQ W
Sbjct: 80  TAEEWRLVFWTTLLVYIIGATVFCLLVSVDRQQW 113


>SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2)
          Length = 237

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 401 LPRISLAVACCDRLPAFDRLRAPSMFPFKNCLPK 502
           LP+I     CCD  PA  R R  SM P    +P+
Sbjct: 136 LPKIEALYICCDIKPAGGRTRKSSMDPTSPLVPQ 169


>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
          Length = 473

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   TQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           T  +WR VF+    VY++ AT + +  S  RQ W
Sbjct: 404 TAEEWRLVFWTTLLVYIIGATVFCLLVSVDRQQW 437


>SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)
          Length = 498

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 179 LSSRSY-RLFCWQPSWHW 129
           +S  SY + FCW+PSW W
Sbjct: 3   VSRNSYLQRFCWRPSWKW 20


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 413 KYVVKITILLLFDINKNIT-LILNKHTSISFYRSKMKRDASI*KIQTRFVIALKCIRY 243
           + V +IT +    +N  I  ++    T I + R K K  AS   +  RF+I + C++Y
Sbjct: 434 RVVRRITEITRTRVNHRIKDIVCEVFTVIGYQRRKKKIMASFQTMVCRFLIVIVCVQY 491


>SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 537 LSYKKKLKRESNFGKQFLKGNIDGARKRSNAGRRSQQATAREIRGKN 397
           L+ +K LKR  N    +   +  G R  ++ G+ +++   RE +G+N
Sbjct: 317 LNLRKSLKRLQNRALDYYPSDQAGERDENSEGKITRKGGFRETKGRN 363


>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
          Length = 679

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 195 ITRKQRTEDERLNKTPVTNTL*SNNKTRLNFLYTC 299
           + R  RT +++ +  P+T  L +N K +L  L++C
Sbjct: 319 LRRSTRTVNKKPSSQPITIELVANGKPKLEMLHSC 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,288
Number of Sequences: 59808
Number of extensions: 303872
Number of successful extensions: 845
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)