Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0320.Seq
         (598 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            29   0.15 
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    26   0.80 
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    25   2.5  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.2  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.3  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 366 KHYFNFKQTYEHLFLPLKNEKRCKYIKNSNAFCYCFKVYS 247
           K  +N  +TY  L   L N+  CKY  +  A C+C   Y+
Sbjct: 712 KLLYNRGRTYVPLVEALPNQFLCKYDTHCFALCHCCDFYA 751


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 110 CPSPVSCPNRRCCRTW 63
           CP  ++ P+RRC R W
Sbjct: 420 CPVRINIPSRRCYRCW 435


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 110 CPSPVSCPNRRCCRTW 63
           CP  +  P RRC + W
Sbjct: 407 CPVKIQIPKRRCFKCW 422


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 425 PLLGKYVVKITILLLFDINKNITLILNKH 339
           PLLGKY++   IL+   I   + ++LN H
Sbjct: 304 PLLGKYLIFAMILVSISICVTV-VVLNVH 331


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 425 PLLGKYVVKITILLLFDINKNITLILNKH 339
           PLLGKY++   IL+   I   + ++LN H
Sbjct: 304 PLLGKYLIFAMILVSISICVTV-VVLNVH 331


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 425 PLLGKYVVKITILLLFDINKNITLILNKH 339
           PLLGK+V+   IL  F I   + ++LN H
Sbjct: 300 PLLGKFVLFTMILDTFSICVTV-IVLNIH 327


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,794
Number of Sequences: 2352
Number of extensions: 9390
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)