Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0320.Seq
(598 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 0.75
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.98
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.98
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.3
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 23 2.3
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 3.0
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 3.0
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 4.0
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 21 6.9
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 21 6.9
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 6.9
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 24.6 bits (51), Expect = 0.75
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 204 KQRTEDERLNKTPVTNTL 257
K+RTE+ L++TPVT L
Sbjct: 338 KERTEEVALDRTPVTQGL 355
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.98
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 425 PLLGKYVVKITILLLFDINKNITLILNKH 339
PLLGKY++ IL+ I + ++LN H
Sbjct: 305 PLLGKYLIFAMILVSISICVTV-VVLNVH 332
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.98
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 425 PLLGKYVVKITILLLFDINKNITLILNKH 339
PLLGKY++ IL+ I + ++LN H
Sbjct: 305 PLLGKYLIFAMILVSISICVTV-VVLNVH 332
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 1.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 425 PLLGKYVVKITILLLFDINKNITLILNKH 339
PLLGK+V+ IL F I + ++LN H
Sbjct: 301 PLLGKFVLFTMILDTFSICVTV-VVLNVH 328
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 23.0 bits (47), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 512 ESLTSVNNS*KETLTELVNGQTLVDDHNRPLLGKYVV 402
E LT +NN+ +E EL N + +V H+ Y+V
Sbjct: 97 EHLTKLNNAIEEKRFELTNRKGVVFHHDDARPHTYLV 133
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 22.6 bits (46), Expect = 3.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 435 SQQATAREIRGKNYYFI 385
SQ +EIRG+ YYF+
Sbjct: 248 SQYHMPKEIRGQLYYFL 264
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.6 bits (46), Expect = 3.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 435 SQQATAREIRGKNYYFI 385
SQ +EIRG+ YYF+
Sbjct: 248 SQYHMPKEIRGQLYYFL 264
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 425 PLLGKYVVKITILLLFDINKNITLILNKH 339
PLLGKY++ IL+ I + +LN H
Sbjct: 310 PLLGKYLLFTMILVTLSIWITV-CVLNVH 337
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 107 PSPVSCPNRRCCRTWHRQRKL 45
P P CP RR +T+ R + L
Sbjct: 1 PGPNGCPRRRGRQTYTRFQTL 21
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 21.4 bits (43), Expect = 6.9
Identities = 6/23 (26%), Positives = 13/23 (56%)
Frame = -3
Query: 71 RTWHRQRKLRPRYRTLSSIALEW 3
R ++ +RP + + ++A EW
Sbjct: 333 RIQRQENNIRPMVKQIDTVAAEW 355
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 6.9
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 425 PLLGKYVVKITILLLFDINKNITLI-LNKHTSISFYRSKMKRDASI*KIQTRFVI 264
PLLGKY++ +L+ + I ++ +N + ++ ++ R I ++ RF++
Sbjct: 297 PLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFI-QVLPRFLL 350
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,536
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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