Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0320.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05680.1 68418.m00625 nuclear pore complex protein-related co...    28   4.1  
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ...    28   5.4  
At2g29650.3 68415.m03602 inorganic phosphate transporter, putati...    28   5.4  
At2g29650.1 68415.m03603 inorganic phosphate transporter, putati...    28   5.4  
At1g69280.1 68414.m07943 expressed protein                             28   5.4  
At1g58280.2 68414.m06630 expressed protein                             28   5.4  
At4g24700.1 68417.m03535 expressed protein                             27   7.2  
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ...    27   9.5  

>At5g05680.1 68418.m00625 nuclear pore complex protein-related
           contains weak similarity to Nuclear pore complex protein
           Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
           protein) (Swiss-Prot:Q99567) [Homo sapiens]
          Length = 810

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 218 LSALFPRDFDSWRLSSRSYRLFCWQPSWHWLRRRRGCPSPVS 93
           +S LFPR+F +W   SR Y     +   H L  R G P P S
Sbjct: 47  VSQLFPRNFMAWDGDSRVYYWDSRRYLLHRLSLRLGEPEPSS 88


>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 706

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 152 CW-QPSWHWLRRRRGCPSPVSCPNRRCCRTWHRQRKLRPRYRTLSS 18
           CW  P+ +   R R C   + C NRR C   H   +LRP Y +  S
Sbjct: 326 CWLHPAQY---RTRLCKDGMGC-NRRVCFFAHANEELRPLYPSTGS 367


>At2g29650.3 68415.m03602 inorganic phosphate transporter, putative
           similar to brain specific Na+-dependent inorganic
           phosphate cotransporter [Rattus norvegicus] GI:507415;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 400

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 17  WRKVFYIAGGVYVVCATFYNIFGSGRR 97
           W  VF I+ G+Y+V    +N+F +G +
Sbjct: 371 WDDVFTISVGLYLVGTVIWNLFSTGEK 397


>At2g29650.1 68415.m03603 inorganic phosphate transporter, putative
           similar to brain specific Na+-dependent inorganic
           phosphate cotransporter [Rattus norvegicus] GI:507415;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 512

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 17  WRKVFYIAGGVYVVCATFYNIFGSGRR 97
           W  VF I+ G+Y+V    +N+F +G +
Sbjct: 483 WDDVFTISVGLYLVGTVIWNLFSTGEK 509


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 323 RKRCSYVCLK-LK*CFY*CRIIIK**FLPRISLAVACCDRL---PAFDRLRAPS 472
           +KRCS++C K    CF  CR       LP       CC RL   P F   R PS
Sbjct: 297 KKRCSWLCCKNTGPCFSCCR-------LPSCGYNFFCCKRLKCCPCFSWCRWPS 343


>At1g58280.2 68414.m06630 expressed protein
          Length = 338

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 401 LPRIS-LAVACCDRLPAFDRLRAPS--MFPFKNC 493
           LP +S L++ CC  LPA D    PS  ++P   C
Sbjct: 19  LPSLSRLSLRCCSSLPAHDMETKPSQGLYPLHRC 52


>At4g24700.1 68417.m03535 expressed protein 
          Length = 143

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 543 EILSYKKKLKRESNFGKQ-FLKGNIDGARKRSNAGRRSQQATAREI 409
           EILS  KKL+RE    +Q F   + DG +K      R  + + R +
Sbjct: 89  EILSVSKKLERELTLEEQTFSSSDNDGLKKMKKKKTRDSRNSLRSL 134


>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 607

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 152 CW-QPSWHWLRRRRGCPSPVSCPNRRCCRTWHRQRKLRPRYRTLSS 18
           CW  P+ +   R R C    +C +RR C   H+  +LRP Y +  S
Sbjct: 278 CWLHPAQY---RTRLCKDETNC-SRRVCFFAHKPEELRPLYPSTGS 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,609
Number of Sequences: 28952
Number of extensions: 211381
Number of successful extensions: 646
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)