Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0319.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 118 9e-28
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 1e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 2e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 3e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 5e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 48 8e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 2e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 47 2e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 47 2e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 4e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 6e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 45 7e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 38 0.001
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 37 0.003
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.004
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.004
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.097
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 3.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 3.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.8
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 6.3
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po... 25 8.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 118 bits (283), Expect = 9e-28
Identities = 55/108 (50%), Positives = 71/108 (65%)
Frame = +3
Query: 237 FQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 416
FQ+ H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK +G
Sbjct: 82 FQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLG 141
Query: 417 YKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNRL 560
++ PTPIQ Q WP+AMSG+++VG S G +TL+Y LPAIVHIN L
Sbjct: 142 FEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPL 189
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +3
Query: 264 PTVLKR-SPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 437
P LK SP EV+E R + + + G++ P+ + + + ++GY++PT I
Sbjct: 385 PEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSI 444
Query: 438 QAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
QAQ P SG++++G + G +T+A++LP HI R
Sbjct: 445 QAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.5 bits (140), Expect = 2e-10
Identities = 25/81 (30%), Positives = 50/81 (61%)
Frame = +3
Query: 306 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 485
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 486 RSPNGFRQTLAYILPAIVHIN 548
+ G +T A+I+P I+ I+
Sbjct: 292 IAETGSGKTAAFIIPLIIAIS 312
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 59.7 bits (138), Expect = 3e-10
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 467
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 468 GKNLVGRSPNGFRQTLAYILPAIVHIN 548
G+++VG + G +T+A+ +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 52.4 bits (120), Expect = 5e-08
Identities = 20/65 (30%), Positives = 42/65 (64%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE+ + G+ G++ P+PIQ + PIA+SG++++ R+ NG +T A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 543 INTNR 557
++T +
Sbjct: 106 VDTKK 110
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 48.4 bits (110), Expect = 8e-07
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +3
Query: 321 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNG 500
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ + G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 501 FRQTLAYILPAI 536
+T ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILP 530
F+ N +++ V G+K+ TP+QA P+ + K+LV + G +TLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 46.8 bits (106), Expect = 2e-06
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F+E D + + + +G+K PTPIQ + P+ ++ ++++G + G +T A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 543 I--NTNRLFGEVMA 578
+ N + F V+A
Sbjct: 108 LWNNPSPFFAVVLA 121
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 46.8 bits (106), Expect = 2e-06
Identities = 22/82 (26%), Positives = 47/82 (57%)
Frame = +3
Query: 291 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 470
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 471 KNLVGRSPNGFRQTLAYILPAI 536
++++G + G +TLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.0 bits (104), Expect = 4e-06
Identities = 21/87 (24%), Positives = 45/87 (51%)
Frame = +3
Query: 333 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQT 512
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV ++ G +T
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 513 LAYILPAIVHINTNRLFGEVMAXCFGL 593
AY++P + + + E F L
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFAL 92
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 45.6 bits (103), Expect = 6e-06
Identities = 18/63 (28%), Positives = 36/63 (57%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F+ + + + G+K PTPIQ + P+ + G+++VG + G +T A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 543 INT 551
+ +
Sbjct: 131 LKS 133
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 45.2 bits (102), Expect = 7e-06
Identities = 19/58 (32%), Positives = 36/58 (62%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG + G +T A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 476
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 477 LVGRSPNGFRQTLAYILPAIVHI 545
++G + G +TLA+I+P I ++
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENL 101
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +3
Query: 258 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 434
P P++ ++ +++ K + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 435 IQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
IQ P S ++L+ +P G +T+AY+ P +
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPIL 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 414 GYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTN 554
G+ +P PIQ+ P A G +++G++ G +TLA+ +P + H N
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRN 187
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/84 (22%), Positives = 43/84 (51%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 476
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 477 LVGRSPNGFRQTLAYILPAIVHIN 548
++ ++ +G +T + + + I+
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID 84
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
F + ++ +K + EPT IQ + G+N +G + G +T A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 425 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 300
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 285 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 416
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 285 PYEVEEYRNKHEVTVS 332
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = -1
Query: 343 TSTPLTVTSCLFLYSSTSYGDLLRTVGCGSKSFC*KVGVKQNPNLGVACSALQRILFSHQ 164
TSTPLT T+C +STS V + + V P C+ +L++
Sbjct: 487 TSTPLTTTNCT---TSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTST 543
Query: 163 SLQILQIYCHRCQTETN 113
+ + C T T+
Sbjct: 544 PVTSTPLATTNCTTSTS 560
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 140 IDLEDLEALVGKKNSLEGRTCDAQIGILFHSNLSTKTFRST 262
ID++DL + +G C +G+L+ S L+ RST
Sbjct: 200 IDVQDLNVSACAFSCHKGLGCPTGLGVLYVSPLAISELRST 240
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 414 PLSLHLVAHNQENL--LLQSIE 355
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 228
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 494 WATAN*ILSRHSYRPALSLNGRRFFVTHCLYTLLH 390
W+ +++ S P L+ NG+ + ++ C LL+
Sbjct: 97 WSNGKALMATGSPLPPLTRNGKEYVISQCNNALLY 131
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 462 MSGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
+SGK++ P G ++L Y LPA++ +R
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVIEGGASR 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,703
Number of Sequences: 5004
Number of extensions: 50460
Number of successful extensions: 159
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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