Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0319.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 5e-15
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 64 1e-10
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 62 3e-10
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 1e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 57 1e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 2e-06
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 49 3e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 49 3e-06
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 47 1e-05
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 45 5e-05
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 44 1e-04
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 42 3e-04
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 41 9e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 39 0.004
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.2
SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 2.9
SB_53310| Best HMM Match : VHS (HMM E-Value=0) 28 5.0
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 6.6
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 78.2 bits (184), Expect = 5e-15
Identities = 34/103 (33%), Positives = 58/103 (56%)
Frame = +3
Query: 237 FQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 416
F + + HP + K+S E+++ R K + VSG P F F + + ++ +
Sbjct: 477 FNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRKLE 536
Query: 417 YKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHI 545
Y +PT IQ Q PIA+SG++++G + G +T A++ PA+VHI
Sbjct: 537 YTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHI 579
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/81 (33%), Positives = 48/81 (59%)
Frame = +3
Query: 303 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 482
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 483 GRSPNGFRQTLAYILPAIVHI 545
G + G +T A+ +P +V I
Sbjct: 143 GVAETGSGKTAAFAIPLLVWI 163
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/105 (30%), Positives = 53/105 (50%)
Frame = +3
Query: 237 FQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 416
F D + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 417 YKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINT 551
++ PTPIQ Q MSG++++G + G +TLAY LP + + T
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRT 136
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +3
Query: 279 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 446
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/74 (32%), Positives = 44/74 (59%)
Frame = +3
Query: 261 HPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 440
HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PTPIQ
Sbjct: 164 HPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPTPIQ 223
Query: 441 AQGWPIAMSGKNLV 482
Q P+ +SG++++
Sbjct: 224 MQVLPVLLSGRDVM 237
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 476
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 477 LVGRSPNGFRQTLAYILPAI 536
++ + G +T A++LP +
Sbjct: 751 VMACAQTGSGKTAAFLLPVM 770
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +3
Query: 327 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFR 506
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ + G
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 507 QTLAYILPAIVHI 545
+T AY+LP + +
Sbjct: 529 KTAAYMLPVLTSL 541
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 291 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 458
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 459 AMSGKNLVG 485
G G
Sbjct: 197 MAHGPKKSG 205
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/65 (29%), Positives = 40/65 (61%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE+ + G+ G+ +P+PIQ + P+A++G++++ R+ NG +T AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 543 INTNR 557
+T +
Sbjct: 109 TDTTK 113
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/65 (29%), Positives = 40/65 (61%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE+ + G+ G+ +P+PIQ + P+A++G++++ R+ NG +T AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 543 INTNR 557
+T +
Sbjct: 109 TDTTK 113
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 264 PTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 440
P + K +P E +E+R E + V G P++ + + + +K Y++PTPIQ
Sbjct: 73 PELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLKKNSYEKPTPIQ 132
Query: 441 AQGWPIAMSGKNLV 482
AQ P+ MSG++++
Sbjct: 133 AQAIPVIMSGRDMI 146
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +3
Query: 354 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPA 533
++ F + G+ G+ PT IQ QG P+A+SG++++G + G +TLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 534 I 536
I
Sbjct: 109 I 109
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 476
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 477 LVGRSPNGFRQT 512
++ + G +T
Sbjct: 174 VMACAQTGSGKT 185
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +3
Query: 312 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 476
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 477 LVGRSPNGFRQTLAYILPAIVHINTNRLFGEVM 575
++ +S +G +T A++L + ++ + + +V+
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVI 177
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 354 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPA 533
I FE+ + + + V GYK+PTP+Q PI ++L+ + G +T A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 534 IVHI 545
+ I
Sbjct: 934 LSRI 937
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +3
Query: 318 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPN 497
EV + G P + F +Y + +G PT +Q WP + G+++ G +
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 498 GFRQTLAYILPAIVHINTNRLFGEV 572
G + LAY+LP I I + ++ E+
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQEL 258
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 396 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ V +G+ PTPIQA P+A+ GK++ + G +T A++LP +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPIL 69
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Frame = +3
Query: 240 QQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY---FEEANF---PDYVQQG 401
Q+ LLD V R P E N + G ++ + E +NF P V++
Sbjct: 116 QKSLLDDDDDVTFRVPKADEIICNPIVENIEGDQIESFQDSEISCEFSNFGVHPKLVEK- 174
Query: 402 VKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+K MG +P PIQ + P S K+L+ +S G ++L ++LP++
Sbjct: 175 LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 396 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
QG+K MG+ T IQ + + G++L+G + G +TLA+++P +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 381 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLVGRSPNGFRQTLAYILPAIVHI 545
PD + + + G+ +PTPIQ+ P A+ ++++G + G +TLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 339 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 452
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 285 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 416
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 313 LFLYSSTSYGDLLRTVGCGSKSFC*KVGVKQNP 215
++++S+ Y ++RT+G G S C +VG P
Sbjct: 28 IYIHSAELYPTVIRTIGVGFASLCARVGAMGAP 60
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 169 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 59
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 297 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 389
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
Length = 253
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 444 QGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHIN 548
+ W I M + + RSPNG + L I+ ++H N
Sbjct: 55 EDWQIIMEICDKIPRSPNGPKDALRSIMKRVIHRN 89
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 193 ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFHGYYSS 50
AL+RI + ++ C +YRR CC L +W H + Y+SS
Sbjct: 197 ALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,656
Number of Sequences: 59808
Number of extensions: 366512
Number of successful extensions: 1043
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -