Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0319.Seq
         (598 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    53   6e-09
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   1.9  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    24   4.3  
AF043440-1|AAC05665.1|  234|Anopheles gambiae putative pupal-spe...    23   5.7  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       23   9.9  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 53.2 bits (122), Expect = 6e-09
 Identities = 25/76 (32%), Positives = 43/76 (56%)
 Frame = +3

Query: 318 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPN 497
           +V VSG    + ++ FE +   + V   V+   Y +PTPIQ    PI ++G++L+  +  
Sbjct: 161 QVRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQT 220

Query: 498 GFRQTLAYILPAIVHI 545
           G  +T A++LP I H+
Sbjct: 221 GSGKTAAFMLPMIHHL 236


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -1

Query: 193 ALQRILFSHQSLQILQ------IYCHRCQTETNYRRIC 98
           A +R+  SHQS  IL+      I CHRC+   + +R C
Sbjct: 180 AQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDC 217


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 216 GFCFTPTFQQKL-LDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVH---NPIQYFEEANFP 383
           G  FT T    + L  +P   +    E+E Y      TVS V ++    PI+  EEA  P
Sbjct: 133 GMRFTTTLACMMDLHYYPLDSQNCTVEIESYG----YTVSDVVMYWRSTPIRGVEEAELP 188

Query: 384 DYVQQGVKTMGYKE 425
            +   G +T   KE
Sbjct: 189 QFTIIGYETNDRKE 202


>AF043440-1|AAC05665.1|  234|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 234

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 270 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY 362
           V++R P  V+  +  H+V    V VH P+ +
Sbjct: 139 VVRREPSAVKIAQPVHKVIAQPVHVHAPVAH 169


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 324 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 431
           T S VE    + ++EE ++ ++  +   T+G K  T
Sbjct: 266 TASPVEPEEGVDFYEELSYDNHPCKRACTLGRKPET 301


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,882
Number of Sequences: 2352
Number of extensions: 11460
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)