Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0319.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 76 2e-14
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 63 2e-10
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 59 2e-09
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 59 3e-09
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 59 3e-09
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 59 3e-09
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 55 4e-08
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 55 4e-08
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 46 3e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 46 3e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 46 3e-05
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 46 3e-05
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 44 8e-05
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 44 8e-05
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 44 8e-05
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 43 2e-04
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 43 2e-04
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 40 0.001
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 40 0.001
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 40 0.001
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 38 0.004
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 38 0.004
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 38 0.007
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 36 0.022
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 36 0.022
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 36 0.022
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 35 0.051
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 34 0.088
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 34 0.088
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 33 0.15
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 29 1.9
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 2.5
U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical pr... 29 2.5
U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein... 29 2.5
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 29 2.5
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 29 2.5
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 28 5.8
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/83 (39%), Positives = 52/83 (62%)
Frame = +3
Query: 303 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 482
+R +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 483 GRSPNGFRQTLAYILPAIVHINT 551
G + G +T A++LP +V I +
Sbjct: 343 GVAETGSGKTAAFLLPLLVWITS 365
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/92 (36%), Positives = 60/92 (65%)
Frame = +3
Query: 270 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 449
V +R YE++++ + ++VT+ G V P+ F EA P + + + +++PT IQ+
Sbjct: 101 VSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGK-FQKPTVIQSIS 159
Query: 450 WPIAMSGKNLVGRSPNGFRQTLAYILPAIVHI 545
WPIAMSG++++ + G +TLA++LPA+VHI
Sbjct: 160 WPIAMSGRDIISIAKTGSGKTLAFMLPALVHI 191
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +3
Query: 237 FQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 416
F + + H + + +V +N + V G++ P+ F +F + + ++
Sbjct: 225 FNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSE 284
Query: 417 YKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHI 545
Y++PTPIQA P A+SG++++G + G +T AY+ PAIVHI
Sbjct: 285 YEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHI 327
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/74 (37%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +3
Query: 330 SGVEVHNPIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFR 506
S V++ P+ FE+A + G ++ G+++P+PIQ+Q WP+ +SG++ +G S G
Sbjct: 74 STVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSG 133
Query: 507 QTLAYILPAIVHIN 548
+TLA++LPA++HI+
Sbjct: 134 KTLAFLLPALLHID 147
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 291 EVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 467
EV+ YR + + +TV G++ PI+ + + + +K Y +PT IQAQ P MS
Sbjct: 281 EVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMS 340
Query: 468 GKNLVGRSPNGFRQTLAYILPAIVHI 545
G++++G + G +TLA++LP HI
Sbjct: 341 GRDVIGIAKTGSGKTLAFLLPMFRHI 366
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 476
++Y N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 178
Query: 477 LVGRSPNGFRQTLAYILPAIVHI 545
L+ + G +T A++LP I HI
Sbjct: 179 LMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 476
++Y N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 162
Query: 477 LVGRSPNGFRQTLAYILPAIVHI 545
L+ + G +T A++LP I HI
Sbjct: 163 LMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 476
++Y N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 159
Query: 477 LVGRSPNGFRQTLAYILPAIVHI 545
L+ + G +T A++LP I HI
Sbjct: 160 LMSCAQTGSGKTAAFLLPIIQHI 182
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +3
Query: 321 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNG 500
V +G +V PI F + + +++++ +KT GY PTP+Q P G++L+ + G
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 213
Query: 501 FRQTLAYILPAI 536
+T A+++P +
Sbjct: 214 SGKTAAFLVPLV 225
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +3
Query: 258 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 434
P + ++S + E R + ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 435 IQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIV 539
IQ QG P+A+SG++++G + G +T+ ++LP ++
Sbjct: 216 IQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILP 530
P + F EAN + +Q+ V GY + TPIQ P+ G +++ + G +T A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 531 AIVH-INTNRL 560
+ I+ N L
Sbjct: 399 IMTRLIDDNNL 409
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILP 530
P + F EAN + +Q+ V GY + TPIQ P+ G +++ + G +T A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 531 AIVH-INTNRL 560
+ I+ N L
Sbjct: 399 IMTRLIDDNNL 409
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILP 530
P + F EAN + +Q+ V GY + TPIQ P+ G +++ + G +T A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 531 AIVH-INTNRL 560
+ I+ N L
Sbjct: 399 IMTRLIDDNNL 409
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
FE+ N + + GY +PTPIQ P+A++GK++ + G +T A++LP +
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = +3
Query: 270 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 449
V KR +++ R + + G + N I F +++ + + ++P+PIQ Q
Sbjct: 97 VEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQS 156
Query: 450 WPIAMSGKNLVGRSPNGFRQTLAYILPAIVHI 545
P +N++ +P G +TLA+ LP I I
Sbjct: 157 IPFMTERRNVLASAPTGSGKTLAFALPVIDEI 188
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 351 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILP 530
P + F +++ P +++ V+ GY TPIQ P+ GK+++ + G +T A++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 351 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILP 530
P + F +++ P +++ V+ GY TPIQ P+ GK+++ + G +T A++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 345 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYI 524
H +++ V + ++ G+ +PTPIQ + P M GK++V S G +T A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 525 LPAI 536
+P +
Sbjct: 80 IPML 83
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 345 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYI 524
H +++ V + ++ G+ +PTPIQ + P M GK++V S G +T A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 525 LPAI 536
+P +
Sbjct: 80 IPML 83
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F EAN + +++ V GY + TPIQ P+ G +++ + G +T A++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 543 I 545
+
Sbjct: 614 L 614
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F EAN + +++ V GY + TPIQ P+ G +++ + G +T A++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 543 I 545
+
Sbjct: 614 L 614
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F EAN + +++ V GY + TPIQ P+ G +++ + G +T A++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 543 I 545
+
Sbjct: 614 L 614
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F + ++ Q ++TM K TP+QA P + G +++G + G +TLA+ +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK 150
Query: 543 INTN 554
++ +
Sbjct: 151 LSVD 154
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F + ++ Q ++TM K TP+QA P + G +++G + G +TLA+ +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK 150
Query: 543 INTN 554
++ +
Sbjct: 151 LSVD 154
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 381 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-NLVGRSPNGFRQTLAYILPAIVHI 545
P+ V + ++ MG+ EPT IQ+ P A+ + +++G + G +TLA+ +P + +
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARL 218
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +3
Query: 300 EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 479
++ K + VE+ + + P + +K M PTPIQ + M G ++
Sbjct: 717 DFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDV 776
Query: 480 VGRSPNGFRQTLAYILPAIVHI 545
V + G +TLA+++P ++ +
Sbjct: 777 VACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +3
Query: 300 EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 479
++ K + VE+ + + P + +K M PTPIQ + M G ++
Sbjct: 717 DFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDV 776
Query: 480 VGRSPNGFRQTLAYILPAIVHI 545
V + G +TLA+++P ++ +
Sbjct: 777 VACAHTGSGKTLAFLIPFVIKL 798
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 396 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+G+K Y +PT IQ +++G ++VG + G +TLA ++P +
Sbjct: 89 EGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 396 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ V+ +G+ T IQA+ + GK+++ + G +TLA++LPAI
Sbjct: 81 KAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAI 127
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 33.9 bits (74), Expect = 0.088
Identities = 13/63 (20%), Positives = 36/63 (57%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE + +K + P+P+QA+ P+ + G++++ ++ +G +TL + + A+ +
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVEN 83
Query: 543 INT 551
+++
Sbjct: 84 LDS 86
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 33.9 bits (74), Expect = 0.088
Identities = 13/63 (20%), Positives = 36/63 (57%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE + +K + P+P+QA+ P+ + G++++ ++ +G +TL + + A+ +
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVEN 83
Query: 543 INT 551
+++
Sbjct: 84 LDS 86
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/58 (20%), Positives = 32/58 (55%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
F + + + + + +G+++ +Q +A+ KN++GR+ G +T A+++P +
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 65 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKN 181
+ETV+ LE N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 354 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPA 533
++ F E P+ ++ V YK T +Q ++ ++V SP G +TLA++LP
Sbjct: 10 LKTFREKLGPELLE--VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPM 67
Query: 534 IVHINTNRL 560
+ I +L
Sbjct: 68 MRMIQNAKL 76
>U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical
protein ZC317.1 protein.
Length = 340
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 435 IQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
+Q + G+ LV +P G +T A+++PAI NR
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALENR 59
>U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein 14
protein.
Length = 528
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 435 IQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
+Q + G+ LV +P G +T A+++PAI NR
Sbjct: 119 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNR 159
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -3
Query: 476 ILSRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILF 297
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+I+F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 296 D 294
+
Sbjct: 86 N 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -3
Query: 476 ILSRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILF 297
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+I+F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 296 D 294
+
Sbjct: 86 N 86
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 120 RRIIAEFVASSKFGTTVSTAIIPV 49
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 120 RRIIAEFVASSKFGTTVSTAIIPV 49
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 258 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 416
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 258 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 416
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,953,561
Number of Sequences: 27780
Number of extensions: 275253
Number of successful extensions: 861
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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