Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0319.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 115 2e-26
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 109 1e-24
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 109 1e-24
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 89 3e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 89 3e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 89 3e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 81 4e-16
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 79 3e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 70 1e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 69 2e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 69 2e-12
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 64 7e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 61 6e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 57 1e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 55 4e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 2e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 52 2e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 52 2e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 51 7e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 49 3e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 49 3e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 6e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 6e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 47 8e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 47 8e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 47 8e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 45 3e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 6e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 44 8e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 44 8e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 43 1e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 43 1e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 43 2e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 43 2e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 42 2e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 41 7e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.001
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 40 0.001
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 39 0.002
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 39 0.002
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 38 0.004
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 38 0.005
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.009
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 34 0.083
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 33 0.11
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 33 0.11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 32 0.25
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.77
At2g25460.1 68415.m03049 expressed protein 30 1.0
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 29 1.8
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 29 1.8
At5g52590.1 68418.m06530 RabGAP/TBC domain-containing protein co... 29 3.1
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 28 4.1
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 7.2
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 27 9.5
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 27 9.5
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 27 9.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 115 bits (277), Expect = 2e-26
Identities = 51/107 (47%), Positives = 72/107 (67%)
Frame = +3
Query: 228 TPTFQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 407
TP F++ P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 57 TP-FEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 408 TMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHIN 548
G+ EPTPIQ+QGWP+AM G++L+G + G +TL+Y+LPAIVH+N
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVN 162
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 109 bits (262), Expect = 1e-24
Identities = 46/121 (38%), Positives = 77/121 (63%)
Frame = +3
Query: 207 PRLGFCFTPTFQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 386
P+ F F++ PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 387 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNRLFG 566
+ + + +G+ EPTPIQAQGWP+A+ G++L+G + G +TLAY+LPA+VH++ G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 567 E 569
+
Sbjct: 235 Q 235
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 109 bits (262), Expect = 1e-24
Identities = 46/121 (38%), Positives = 77/121 (63%)
Frame = +3
Query: 207 PRLGFCFTPTFQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 386
P+ F F++ PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 387 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNRLFG 566
+ + + +G+ EPTPIQAQGWP+A+ G++L+G + G +TLAY+LPA+VH++ G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 567 E 569
+
Sbjct: 235 Q 235
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/100 (40%), Positives = 58/100 (58%)
Frame = +3
Query: 258 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 437
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 438 QAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
QAQ WPIAM G+++V + G +TL Y++P +H+ R
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIR 224
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/100 (40%), Positives = 58/100 (58%)
Frame = +3
Query: 258 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 437
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 438 QAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
QAQ WPIAM G+++V + G +TL Y++P +H+ R
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIR 224
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/100 (40%), Positives = 58/100 (58%)
Frame = +3
Query: 258 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 437
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 438 QAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
QAQ WPIAM G+++V + G +TL Y++P +H+ R
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIR 224
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 81.4 bits (192), Expect = 4e-16
Identities = 33/85 (38%), Positives = 53/85 (62%)
Frame = +3
Query: 291 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 470
E +YR + + VSG +VH P++ FE+ F + +K Y++PT IQ Q PI +SG
Sbjct: 206 ETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSG 265
Query: 471 KNLVGRSPNGFRQTLAYILPAIVHI 545
++++G + G +T A++LP IVHI
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHI 290
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 78.6 bits (185), Expect = 3e-15
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Frame = +3
Query: 231 PTFQQK-LLDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 395
P F K L+ PH P V SP E+ YR +HEVT +G + P FE + P +
Sbjct: 390 PAFPNKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEIL 447
Query: 396 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIV 539
+ + + G+ PTPIQAQ WPIA+ +++V + G +TL Y++PA +
Sbjct: 448 RELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/84 (36%), Positives = 50/84 (59%)
Frame = +3
Query: 294 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 473
V YR + E+ V G +V PIQ++ + + +K + Y++P PIQAQ PI MSG+
Sbjct: 375 VNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGR 434
Query: 474 NLVGRSPNGFRQTLAYILPAIVHI 545
+ +G + G +TL ++LP + HI
Sbjct: 435 DCIGVAKTGSGKTLGFVLPMLRHI 458
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/90 (34%), Positives = 55/90 (61%)
Frame = +3
Query: 270 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 449
V K S +++ R + +TV+G ++ PI+ F + FP + + +K G PTPIQ QG
Sbjct: 68 VRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 450 WPIAMSGKNLVGRSPNGFRQTLAYILPAIV 539
P+ +SG++++G + G +TL ++LP I+
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 68.9 bits (161), Expect = 2e-12
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = +3
Query: 291 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 470
EV YR + E+ V G +V PI+++ + + +K + Y++P PIQ Q PI MSG
Sbjct: 507 EVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSG 566
Query: 471 KNLVGRSPNGFRQTLAYILPAIVHI 545
++ +G + G +TL ++LP + HI
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHI 591
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 64.1 bits (149), Expect = 7e-11
Identities = 29/90 (32%), Positives = 54/90 (60%)
Frame = +3
Query: 270 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 449
+ K S + + R + + V+G ++ PI+ F++ FP V +K G +PTPIQ QG
Sbjct: 117 IRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
Query: 450 WPIAMSGKNLVGRSPNGFRQTLAYILPAIV 539
P+ ++G++++G + G +TL ++LP I+
Sbjct: 177 LPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 60.9 bits (141), Expect = 6e-10
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +3
Query: 291 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 464
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 465 SGKNLVGRSPNGFRQTLAYILPAIVHI 545
G++L+G + G +TLA+ +PAI+H+
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 306 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 473
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 474 NLVGRSPNGFRQTLAYILPAIVHI 545
+P G +T A+I P ++ +
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKL 203
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/82 (25%), Positives = 47/82 (57%)
Frame = +3
Query: 303 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 482
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 483 GRSPNGFRQTLAYILPAIVHIN 548
G + G +T A++LP + +I+
Sbjct: 355 GIAETGSGKTAAFVLPMLAYIS 376
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +3
Query: 402 VKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHI 545
V + G+ P+PIQAQ WPIAM +++V + G +TL Y++P +H+
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 297 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 386
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +3
Query: 324 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGF 503
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L + G
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 504 RQTLAYILPAI 536
+T A+ LP +
Sbjct: 216 GKTAAFALPTL 226
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 282 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 455
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 456 IAMSGKNLVGRSPNGFRQTLAYILPAIVHINT 551
A++GK+L+ + G +T ++++P I T
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTT 174
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 50.8 bits (116), Expect = 7e-07
Identities = 29/82 (35%), Positives = 42/82 (51%)
Frame = +3
Query: 291 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 470
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 471 KNLVGRSPNGFRQTLAYILPAI 536
K++V R+ G +TLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +3
Query: 234 TFQQKLLDPHPTVLK---RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 404
T Q +++DP+ K + P YR + G E FE+ + G+
Sbjct: 94 TVQSEVIDPNSEDWKARLKLPAPDTRYRTEDVTATKGNE-------FEDYFLKRELLMGI 146
Query: 405 KTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHIN 548
G++ P+PIQ + PIA++G++++ R+ NG +T A+ +P + I+
Sbjct: 147 YEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +3
Query: 234 TFQQKLLDPHPTVLK---RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 404
T Q +++DP+ K + P YR + G E FE+ + G+
Sbjct: 94 TVQSEVIDPNSEDWKARLKLPAPDTRYRTEDVTATKGNE-------FEDYFLKRELLMGI 146
Query: 405 KTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHIN 548
G++ P+PIQ + PIA++G++++ R+ NG +T A+ +P + I+
Sbjct: 147 YEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKID 194
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/90 (27%), Positives = 47/90 (52%)
Frame = +3
Query: 267 TVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 446
T K EVE+ + ++ + + + FE + D + +K MG+ T IQA+
Sbjct: 127 TEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKEMGFARMTQIQAK 183
Query: 447 GWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
P M G++++G + G +TLA+++PA+
Sbjct: 184 AIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE N V +K GYK PTPIQ + P+ +SG ++V + G +T A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 543 INTNRLFGEVMA 578
+ + G V A
Sbjct: 90 LKQHVPQGGVRA 101
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/64 (31%), Positives = 40/64 (62%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE+ + +G+ G+++P+PIQ + PIA++G +++ R+ NG +T A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 543 INTN 554
I+ N
Sbjct: 186 IDPN 189
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/64 (31%), Positives = 40/64 (62%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE+ + +G+ G+++P+PIQ + PIA++G +++ R+ NG +T A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 543 INTN 554
I+ N
Sbjct: 186 IDPN 189
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 47.2 bits (107), Expect = 8e-06
Identities = 18/45 (40%), Positives = 32/45 (71%)
Frame = +3
Query: 411 MGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVHI 545
MG++ PT +QAQ P+ +SG++++ +P G +T+AY+ P I H+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL 92
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE+ + +G+ G+++P+PIQ + PIA++G +++ R+ NG +T A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 543 IN 548
I+
Sbjct: 216 ID 217
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 321 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNG 500
+ SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+ + G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 501 FRQTLAYILPAI 536
+T A+ P I
Sbjct: 207 SGKTAAFCFPII 218
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/99 (28%), Positives = 50/99 (50%)
Frame = +3
Query: 240 QQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 419
++K + V S E ++ K ++ V VEV NP + +++ +K G
Sbjct: 58 KRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGI 116
Query: 420 KEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ PIQA + + + G +LVGR+ G +TLA++LP +
Sbjct: 117 EALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPIL 155
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FEE PD + ++ G+ PT +Q+ P + G + V +S G +TLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 543 I 545
I
Sbjct: 172 I 172
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = +3
Query: 339 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLA 518
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G + G +T A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 519 YILPAI 536
+ +P +
Sbjct: 63 FAIPIL 68
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 321 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNG 500
+ SG V P+ F E + + + ++ Y +PTP+Q PI +G++L+ + G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 501 FRQTLAYILPAI 536
+T A+ P I
Sbjct: 194 SGKTAAFCFPII 205
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 321 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNG 500
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ + G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 501 FRQTLAYILPAI 536
+T A+ P I
Sbjct: 199 SGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 321 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNG 500
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ + G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 501 FRQTLAYILPAI 536
+T A+ P I
Sbjct: 199 SGKTAAFCFPII 210
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/77 (24%), Positives = 41/77 (53%)
Frame = +3
Query: 354 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPA 533
++ F + D ++G+K Y + T +Q+ P A+ G++++G + G +TLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 534 IVHINTNRLFGEVMAXC 584
+ ++ R E C
Sbjct: 130 LEKLHRERWSPEDGVGC 146
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 354 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPA 533
++ F+E + V ++ + + PT IQ G P M K++V S G +TLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 534 I 536
+
Sbjct: 171 V 171
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
FE ++ + K +G ++PTP+Q P ++G++++G + G +T A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/81 (23%), Positives = 43/81 (53%)
Frame = +3
Query: 294 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 473
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 474 NLVGRSPNGFRQTLAYILPAI 536
+++G + G +TLA+++PA+
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
F++ +G++ G+K T +Q P+ + GK+++ ++ G +T+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI 139
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +3
Query: 351 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQT--LAYI 524
PI+ F++ D V +GV GYK+P+ IQ + + G++++ ++ +G +T +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 525 LPAIVHINTNRL 560
+ IV+I++ ++
Sbjct: 80 VCQIVNISSRKV 91
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +3
Query: 396 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ +K GY+ T +Q PI + GK+++ ++ G +T+A++LP+I
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI 113
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +3
Query: 396 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ +K G++ T +Q PI + GK+++ ++ G +T+A++LPAI
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 363 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAIVH 542
F E + + + +K + P IQA + + GK+ + +G +TLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 543 INTNRLFG 566
+ L G
Sbjct: 436 LREEELQG 443
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 390 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGRSPNGFRQTLAYILPAIVHINTNR 557
+ + + + +KEPT IQ + +A GK+++G + G +TLA+ LP + + R
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDER 257
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 414 GYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
G++ TP+QA+ P S K++V + G +TLA++LP I
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 414 GYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
G++ TP+QA+ P S K++V + G +TLA++LP I
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 390 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ + +K G ++ PIQ AM G++++GR+ G +TLA+ +P I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 390 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ + + + G ++ PIQ AM G++++GR+ G +TLA+ +P I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 375 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+ P +++ ++ G PIQ A+ G++++ R+ G +TLA+ +P I
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPII 161
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 172 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 56
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 231 PTFQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 398
P +++ D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 157 PQMPKQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 231 PTFQQKLLDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 398
P +++ D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 233 PQMPKQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g52590.1 68418.m06530 RabGAP/TBC domain-containing protein
contains similarity to SP|P48365 GTPase-activating
protein GYP7 {Saccharomyces cerevisiae}; contains Pfam
profile PF00566: TBC domain
Length = 338
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 549 YLCAQLLARCRPTFAGTRLGYGQLNSFQT*LSASLELE 436
Y+C +L RCR G ++ + L F LS ++L+
Sbjct: 257 YVCVAVLKRCRSKIMGEQMDFDTLLKFINELSGHIDLD 294
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 429 TPIQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
TP+QA P+ S K++ + G +TLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 53 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 199
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 527 QDVGQRL--PEPVWATAN*ILSRHSYRPALSLNGRRFFVTHCLY 402
QD+G RL P+ ATA R +R + + N RR T C++
Sbjct: 68 QDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMF 111
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 390 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGRSPNGFRQTLAYILPAI 536
+++ ++ MG P+Q W I G +++ SP G +TL+Y LP +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIV 84
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 264 PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTP 434
P + R ++ + ++ V E H+ I + F+E+ + + G + T
Sbjct: 341 PLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTR 400
Query: 435 IQAQGWPIAMSGKNLVGRSPNGFRQTLAYILPAI 536
+Q + GK+ + ++ G +++A++LPAI
Sbjct: 401 VQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,238,633
Number of Sequences: 28952
Number of extensions: 254424
Number of successful extensions: 778
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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