Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0318.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   4.1  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   4.1  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   5.4  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   5.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.4  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   9.4  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory
          receptor candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 8  KSQLFYLQIFITTYIL 55
          KS  FY   +IT+Y L
Sbjct: 52 KSDYFYFSFYITSYTL 67


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory
          receptor candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 8  KSQLFYLQIFITTYIL 55
          KS  FY   +IT+Y L
Sbjct: 52 KSDYFYFSFYITSYTL 67


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 458 STNVSIYYNIV*FIVSEYYC*LNRLTLFVENLDLLI 351
           +TN+ I    V ++V+ + C + +  +FVE L  L+
Sbjct: 351 TTNIIILGLNVVYVVTAWICAITKRDMFVEFLLKLV 386


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 458 STNVSIYYNIV*FIVSEYYC*LNRLTLFVENLDLLI 351
           +TN+ I    V ++V+ + C + +  +FVE L  L+
Sbjct: 76  TTNIIILGLNVVYVVTAWICAITKRDMFVEFLLKLV 111


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +3

Query: 204 YNICLRSRVSTVVVE 248
           YN+C R R ++++++
Sbjct: 401 YNVCFRPRNNSILIK 415


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 257 AAALNYDSRYSGSQTNVVVY 198
           AAA+ Y     G++ N++VY
Sbjct: 6   AAAIAYGLDKKGAEQNILVY 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,377
Number of Sequences: 336
Number of extensions: 2298
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)