Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0318.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_4281| Best HMM Match : Cornifin (HMM E-Value=0.78)                  29   2.5  
SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 5   FKSQLFYLQIFITTYILCVSLVVCSCQIAYS 97
           +K QL+Y+     T +LC  L  CSC ++Y+
Sbjct: 222 YKVQLYYVLYLQGTVVLCPILTRCSCTMSYT 252



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   FKSQLFYLQIFITTYILCVSLVVCSCQIAYS 97
           +K QL+Y+       +LC  L  CSC ++Y+
Sbjct: 36  YKVQLYYVLYLQGAVVLCPILTRCSCTMSYT 66



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   FKSQLFYLQIFITTYILCVSLVVCSCQIAYS 97
           +K QL+Y+       +LC  L  CSC ++Y+
Sbjct: 67  YKVQLYYVLYLQGAVVLCPILTRCSCTMSYT 97



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   FKSQLFYLQIFITTYILCVSLVVCSCQIAYS 97
           +K QL+Y+       +LC  L  CSC  +Y+
Sbjct: 191 YKVQLYYVMYLQGAVVLCPILTRCSCTTSYT 221



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 5  FKSQLFYLQIFITTYILCVSLVVCSCQIAYS 97
          +K QL+Y+       +LC  L  CSC ++Y+
Sbjct: 5  YKVQLYYVLYLQGAVVLCHILTRCSCTMSYT 35



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   FKSQLFYLQIFITTYILCVSLVVCSCQIAYS 97
           +K QL+Y+       +LC  L  CSC  +Y+
Sbjct: 160 YKVQLYYVLYLQGAVVLCPILTRCSCTTSYT 190


>SB_4281| Best HMM Match : Cornifin (HMM E-Value=0.78)
          Length = 389

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 219 RSRVSTVVVEGGRTQAHAXXXXXXHLFVDIPFGTGSCYH 335
           R R +T   E GR +         H  +D+P  TG  YH
Sbjct: 239 RDRTTTSTNEPGRNRITTSAEGLPHRQIDVPMSTGKNYH 277


>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 210 ICLRSRVSTVVVEGGRTQAHAXXXXXXHLFVDIPFGTGSCY 332
           +C RS +   +V   RT  H       HL VD+ FG+G C+
Sbjct: 328 VCTRSPLRCRIVGFLRTP-HLYGRYSTHLRVDLDFGSGRCH 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,838
Number of Sequences: 59808
Number of extensions: 248925
Number of successful extensions: 387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)