Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0318.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical pr...    23   5.7  
U41264-9|AAA82429.3|  240|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical
           protein T05A1.3 protein.
          Length = 747

 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 302 YK*MCECECEC 270
           Y  MCE +CEC
Sbjct: 373 YSNMCEADCEC 383



 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 290 CECECECVSLCAAALNYDSRYSGSQTNVVV 201
           CEC  EC   C    + D     +  N++V
Sbjct: 389 CECRFECPPTCKCLRSADVSIVRTSQNIMV 418


>U41264-9|AAA82429.3|  240|Caenorhabditis elegans Hypothetical
           protein F10E7.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 32  IFITTYILCVSLVVCSCQIAYSKNLISSLFNGRNNYFV 145
           +F+TTY LC++L++    I  S +LI    +  N +FV
Sbjct: 203 VFLTTYCLCLTLIL-KRSIRLSNHLIFKKVHCFNLFFV 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,906,116
Number of Sequences: 27780
Number of extensions: 202344
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)