Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0317.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.0  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   3.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 294 SEFSHQGNYHLRAHA 250
           +E+ H   YHLR HA
Sbjct: 240 TEYKHHLEYHLRNHA 254


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 115 WVCPCDGGSRSINHQDFYYLPFYS 44
           W+C     + S   ++FYYLP  S
Sbjct: 49  WICALVNYNVSEISENFYYLPAMS 72


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 590  PVSEATMQNGDGSVSTTFELDGRACPP 510
            PV+  + Q G  S S    L G A PP
Sbjct: 1087 PVALKSAQQGSSSSSEGVPLKGTAVPP 1113


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 105 LATEDRGR*IIRTFIICHFIQNLLLESKNY 16
           LA +   + ++ T +   F+QNL+L+   Y
Sbjct: 149 LAVKTTSKSLVPTPVTHIFLQNLILKENTY 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,452
Number of Sequences: 336
Number of extensions: 3289
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)