Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0317.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    89   6e-19
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    30   0.29 
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    29   0.68 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   0.90 
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    27   2.1  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    27   2.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.7  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    26   4.8  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    26   4.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.3  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   8.4  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 41/68 (60%), Positives = 53/68 (77%)
 Frame = +1

Query: 46  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 225
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80

Query: 226 GKRRKETV 249
           GKRRK+TV
Sbjct: 81  GKRRKDTV 88



 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 37/97 (38%), Positives = 56/97 (57%)
 Frame = +3

Query: 249 LHVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLL 428
           L VL+D+   D   R+             D+V+I PCP +KY +R+ +LP+ D+  G+  
Sbjct: 89  LIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTG 148

Query: 429 AIYSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
           +++  Y   PYF+EAYRPI + D F+V G+   VEFK
Sbjct: 149 SLFDVYL-KPYFVEAYRPIRKGDLFVVRGSMRQVEFK 184


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 592 FRYQKPRCKMVMDLFRPLLNSTGAHAP 512
           FRYQK  CK+++D++ P L+S    AP
Sbjct: 724 FRYQKKICKLLLDIY-PQLHSIDYQAP 749


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 124 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVCMC 258
           + +E  SD++ ++A++     EQ+   R    D  LL GK++KE +C C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIICCC 557


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 71  LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 184
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -2

Query: 420 PLNLNHQLAV--C-GLVFHISLKDTELWIPHQKDAHEGCFSRHGSSEFSHQGNYHLRAHA 250
           P  L H+ A   C  L FH ++ D   W PH+ +   G F  H     + +G +  R   
Sbjct: 162 PHGLPHRRAALPCEALGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRGGFCGRHGR 221

Query: 249 NGF 241
            GF
Sbjct: 222 GGF 224


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 92  SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANA 235
           SSV       S S   ++M++ + +F+    S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 191 FNSSVVTQSCSKANAARKPFACALR 265
           ++S +++ + SK NAA  PF  A++
Sbjct: 302 YDSDILSSNASKGNAAASPFVVAIK 326


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 384 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 274
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 417 LNLNHQLAVCGLV---FHISLKDTELWI 343
           + LN ++  CG++   F++ LKD E W+
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 70  PD-DLSTAILRRKDRPNRLIVEEAVSD 147
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 417 LNLNHQLAVCGLV---FHISLKDTELWI 343
           + LN ++  CG++   F++ LKD E W+
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 43  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 201
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 505 WSGGHARPSSSKVVETDP 558
           W+ GH  P    VV TDP
Sbjct: 31  WTSGHIEPLEWSVVSTDP 48


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 130 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 243
           E+AV D+N+ ++L+  +  +    RGD  ++ G   ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 394  CQLMIQVEGSYWQSIRSILEARTSWRLTVRSIVTTPSWSGGHA-RPSSSKVVE 549
            C+L+++V  S  +S+ ++LEA     L    ++T  S+      RP+SS V E
Sbjct: 2199 CELVMRVLRSNTESLMAVLEAFVYDPLINWRLMTKSSFGASTTLRPTSSSVEE 2251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,253
Number of Sequences: 5004
Number of extensions: 53713
Number of successful extensions: 167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)