Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0317.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986...    97   9e-21
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283...    96   2e-20
08_02_0657 - 19749835-19751942,19753123-19753561                       77   1e-14
01_03_0044 - 11927272-11928516                                         29   3.7  
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601...    28   6.5  
06_01_0057 - 483710-484309                                             28   6.5  
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214...    27   8.6  

>10_08_0170 +
           15397381-15397418,15397519-15397681,15398419-15398647,
           15398777-15399543,15399650-15399871,15399961-15400032,
           15400100-15400408,15400491-15400850,15401199-15401492
          Length = 817

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 46/67 (68%), Positives = 54/67 (80%)
 Frame = +1

Query: 55  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 234
           AD K   D STAIL RK  PNRL+V+EA +DDNSVVAL    ME+LQLFRGDTVLLKGK+
Sbjct: 11  ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70

Query: 235 RKETVCM 255
           RK+T+C+
Sbjct: 71  RKDTICI 77



 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 44/95 (46%), Positives = 57/95 (60%)
 Frame = +3

Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
           VL+D+ C + KIRM             DVVS+  C  VKYGKRVHILPIDD+  G+   +
Sbjct: 78  VLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNL 137

Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
           +  +   PYF+EAYRP+ + D F+V G    VEFK
Sbjct: 138 FDAFL-KPYFLEAYRPVRKGDLFLVRGGMRSVEFK 171



 Score = 33.9 bits (74), Expect = 0.099
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 514 GHARPSSSKVVETDPSPFCIVASDTGI 594
           G  R    KV+ETDP+ +CIVA DT I
Sbjct: 163 GGMRSVEFKVIETDPTEYCIVAPDTEI 189


>03_01_0364 -
           2834446-2834742,2834838-2835197,2835281-2835562,
           2835634-2835705,2835798-2836019,2836105-2836871,
           2837206-2837434,2838027-2838189,2838313-2838350
          Length = 809

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 46/95 (48%), Positives = 58/95 (61%)
 Frame = +3

Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
           VL+DD C + KIRM             DVVS+  CP VKYGKRVHILPIDD+  G+   +
Sbjct: 78  VLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGITGNL 137

Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
           +  +   PYF+EAYRP+ + D F+V G    VEFK
Sbjct: 138 FDAFL-KPYFLEAYRPLRKGDLFLVRGGMRSVEFK 171



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 42/67 (62%), Positives = 53/67 (79%)
 Frame = +1

Query: 55  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 234
           +D K   D STAIL RK  PNRL+V+EA +DDNSV+ +    ME+LQLFRGDTVLLKGK+
Sbjct: 11  SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70

Query: 235 RKETVCM 255
           RK+T+C+
Sbjct: 71  RKDTICI 77



 Score = 33.9 bits (74), Expect = 0.099
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 514 GHARPSSSKVVETDPSPFCIVASDTGI 594
           G  R    KV+ETDP+ +CIVA DT I
Sbjct: 163 GGMRSVEFKVIETDPAEYCIVAPDTEI 189


>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 34/92 (36%), Positives = 53/92 (57%)
 Frame = +3

Query: 264 DDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAIYSK 443
           D++CPD ++R+             D+V++ PCP+++  KRV + P DDS  G+   ++  
Sbjct: 84  DESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISGDLFEP 143

Query: 444 YT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
           Y   PYFM+A RP+ + D F+V G    VEFK
Sbjct: 144 YL-KPYFMDALRPVKKGDRFLVRGHMHAVEFK 174



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 5/64 (7%)
 Frame = +1

Query: 76  DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 240
           D STAIL   +K  PNRL+ ++A   V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16  DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75

Query: 241 ETVC 252
           E VC
Sbjct: 76  EAVC 79


>01_03_0044 - 11927272-11928516
          Length = 414

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 467 GGLPSDPS*RHLHGRGGMRARRVQKWSKQ 553
           GG P DP  R   G GG  A RV +W ++
Sbjct: 290 GGPPCDPDGRDWAGGGGDAASRVARWIEE 318


>09_04_0529 +
           18356964-18358307,18359829-18359944,18360036-18360133,
           18360234-18360418
          Length = 580

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 497 HLHGRGGMRARRVQKWSKQIHHHF 568
           H HGRGG      Q+ +K  HH F
Sbjct: 457 HSHGRGGAALASSQERAKNSHHEF 480


>06_01_0057 - 483710-484309
          Length = 199

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 80  YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSK 226
           Y P    ART P  ++   + A    S W F    WS+  S V+T+  S+
Sbjct: 62  YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111


>07_03_1607 +
           28119886-28120239,28121097-28121153,28121377-28121464,
           28121557-28121686,28121783-28121962,28122291-28122759
          Length = 425

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +1

Query: 397 QLMIQVEGS--YWQSIRSILEAR---TSWRLTVRSIVTTPSWSGGHARPSSSK 540
           +++ +VE S  +W   R ++       SWR  VR IV TP  SG    P S K
Sbjct: 65  EVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLK 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,888
Number of Sequences: 37544
Number of extensions: 376890
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)