Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0317.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 105 4e-23
SB_23022| Best HMM Match : CUB (HMM E-Value=0) 31 0.53
SB_46953| Best HMM Match : DUF1014 (HMM E-Value=0.83) 30 1.6
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 2.9
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 28 5.0
SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29) 28 6.6
SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06) 28 6.6
SB_231| Best HMM Match : Granulin (HMM E-Value=5.4) 28 6.6
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016) 27 8.7
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 105 bits (251), Expect = 4e-23
Identities = 47/61 (77%), Positives = 58/61 (95%)
Frame = +1
Query: 73 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 252
D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5 DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64
Query: 253 M 255
+
Sbjct: 65 I 65
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 514 GHARPSSSKVVETDPSPFCIVASDTGIH 597
G R KV+ETDPSP+CIVA DT IH
Sbjct: 110 GGMRAVEFKVIETDPSPYCIVAPDTVIH 137
>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
Length = 1307
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 412 VEGSYWQSIRSILEARTSWRLTVRSIVTTPSWSGGHARPSSSKVVETDPSPFCIV 576
+E S + SIL + +SWR+ S VTTP+ + P SS+ E C V
Sbjct: 980 LEPSSIMTSTSILPSTSSWRIPTSSSVTTPTSAPTPTTPVSSQTYEITLEGDCAV 1034
>SB_46953| Best HMM Match : DUF1014 (HMM E-Value=0.83)
Length = 284
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 342 PHQKDAHEGCFSRHGSSEFSHQGN--YHLRAH 253
P +KDA+ FSRH S H N H RAH
Sbjct: 235 PSEKDAYYDAFSRHYSFSAKHSSNKAKHQRAH 266
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 407 IINWQYVDSFS-IFH*RTRSYGYHIRKTHT 321
II W Y +S+ IFH TR +G H+ T T
Sbjct: 2525 IIAWVYPESWGPIFHYNTRGWGVHLWLTRT 2554
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 432 LPVRPLNLNHQLAVCGLVFHISLKDTELWIPHQKDAHEGCFSRHGSSEFSHQ 277
LP + LN +LAV V + E P + H+ +RH S HQ
Sbjct: 3877 LPANNVTLNPRLAVISRVKRQEINLFEALKPKESPTHDQAMTRHPKSPTVHQ 3928
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +1
Query: 316 TFVCVFLMWYP*LRVLQ*NMENESTYCQLMIQVEGSYWQSIRSI-----LEARTSWRLTV 480
T +F+ W+ R++ ++ YC L+ +Q +RSI L + S T
Sbjct: 674 TINLIFISWFGEKRLIA-VLDRMRPYCNLLFSWCNGEYQVLRSIDVWESLSPKESG--TR 730
Query: 481 RSIVTTPSWSGGHARPSSSKVVETDPSPFCIVASD 585
+S TP + G + +S+ ++TD +C V D
Sbjct: 731 KSNSETPDGALGFSDRPTSRPLDTDRMIYCCVLQD 765
>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
Length = 770
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 492 HDGSDGKPP*STGFKYTSNRLPVRPLNLN 406
H G PP S +Y S R P RP+ LN
Sbjct: 362 HPHYGGSPPSSRNQQYGSRRPPPRPIQLN 390
>SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)
Length = 285
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 321 EGCFSRHGSSEFSHQGNYHLRAHANGFLAAFAFEQDCVTTEE 196
+G + R+ S H+ ++HL H N FL A EQ C T E
Sbjct: 2 DGGYLRNALSRL-HRASFHLTLHDNQFLGR-ASEQPCDVTGE 41
>SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)
Length = 85
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 407 IINWQYVDSFSIFH*RTRSYGYHIRKTH--TKVVSHD 303
+++ Q++D+ +FH RS +R TH +VV HD
Sbjct: 35 VVSNQFIDTALLFHFNHRSASDSVRLTHEQVQVVKHD 71
>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
Length = 583
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 450 KYTSNRLPVRPLNLNHQLAVCGLVFHISLKDTELWIPHQKDAHEGCFSRHGSS-EFSH 280
KYTS R LNL + VC + SL+ + +P ++D + +H S E+ H
Sbjct: 32 KYTSQRFEGVRLNLMARKGVCPYDYMDSLERFDEKLPAREDFDSTLYDQHISEVEYKH 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,071,849
Number of Sequences: 59808
Number of extensions: 427775
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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