Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0317.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 106 7e-23
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 106 7e-23
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 106 7e-23
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 106 7e-23
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 106 7e-23
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 106 7e-23
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 40 0.005
BC004304-1|AAH04304.1| 320|Homo sapiens uroplakin 3B protein. 32 1.8
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 106 bits (254), Expect = 7e-23
Identities = 50/95 (52%), Positives = 60/95 (63%)
Frame = +3
Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
VLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+ G+ +
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
+ Y PYF+EAYRPI + D F+V G VEFK
Sbjct: 131 FEVYL-KPYFLEAYRPIRKGDIFLVRGGMRAVEFK 164
Score = 105 bits (251), Expect = 2e-22
Identities = 49/67 (73%), Positives = 63/67 (94%)
Frame = +1
Query: 55 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 234
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 235 RKETVCM 255
R+E VC+
Sbjct: 64 RREAVCI 70
Score = 38.7 bits (86), Expect = 0.015
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +1
Query: 514 GHARPSSSKVVETDPSPFCIVASDTGIH 597
G R KVVET PSP+CIVA DT IH
Sbjct: 156 GGMRAVEFKVVETHPSPYCIVAPDTVIH 183
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 106 bits (254), Expect = 7e-23
Identities = 50/95 (52%), Positives = 60/95 (63%)
Frame = +3
Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
VLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+ G+ +
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
+ Y PYF+EAYRPI + D F+V G VEFK
Sbjct: 131 FEVYL-KPYFLEAYRPIRKGDIFLVRGGMRAVEFK 164
Score = 105 bits (251), Expect = 2e-22
Identities = 49/67 (73%), Positives = 63/67 (94%)
Frame = +1
Query: 55 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 234
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 235 RKETVCM 255
R+E VC+
Sbjct: 64 RREAVCI 70
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +1
Query: 514 GHARPSSSKVVETDPSPFCIVASDTGIH 597
G R KVVETDPSP+CIVA DT IH
Sbjct: 156 GGMRAVEFKVVETDPSPYCIVAPDTVIH 183
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 106 bits (254), Expect = 7e-23
Identities = 50/95 (52%), Positives = 60/95 (63%)
Frame = +3
Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
VLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+ G+ +
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
+ Y PYF+EAYRPI + D F+V G VEFK
Sbjct: 131 FEVYL-KPYFLEAYRPIRKGDIFLVRGGMRAVEFK 164
Score = 105 bits (251), Expect = 2e-22
Identities = 49/67 (73%), Positives = 63/67 (94%)
Frame = +1
Query: 55 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 234
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 235 RKETVCM 255
R+E VC+
Sbjct: 64 RREAVCI 70
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +1
Query: 514 GHARPSSSKVVETDPSPFCIVASDTGIH 597
G R KVVETDPSP+CIVA DT IH
Sbjct: 156 GGMRAVEFKVVETDPSPYCIVAPDTVIH 183
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 106 bits (254), Expect = 7e-23
Identities = 50/95 (52%), Positives = 60/95 (63%)
Frame = +3
Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
VLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+ G+ +
Sbjct: 9 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 68
Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
+ Y PYF+EAYRPI + D F+V G VEFK
Sbjct: 69 FEVYL-KPYFLEAYRPIRKGDIFLVRGGMRAVEFK 102
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +1
Query: 514 GHARPSSSKVVETDPSPFCIVASDTGIH 597
G R KVVETDPSP+CIVA DT IH
Sbjct: 94 GGMRAVEFKVVETDPSPYCIVAPDTVIH 121
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 106 bits (254), Expect = 7e-23
Identities = 50/95 (52%), Positives = 60/95 (63%)
Frame = +3
Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
VLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+ G+ +
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
+ Y PYF+EAYRPI + D F+V G VEFK
Sbjct: 131 FEVYL-KPYFLEAYRPIRKGDIFLVRGGMRAVEFK 164
Score = 105 bits (251), Expect = 2e-22
Identities = 49/67 (73%), Positives = 63/67 (94%)
Frame = +1
Query: 55 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 234
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 235 RKETVCM 255
R+E VC+
Sbjct: 64 RREAVCI 70
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +1
Query: 514 GHARPSSSKVVETDPSPFCIVASDTGIH 597
G R KVVETDPSP+CIVA DT IH
Sbjct: 156 GGMRAVEFKVVETDPSPYCIVAPDTVIH 183
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 106 bits (254), Expect = 7e-23
Identities = 50/95 (52%), Positives = 60/95 (63%)
Frame = +3
Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
VLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+ G+ +
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
+ Y PYF+EAYRPI + D F+V G VEFK
Sbjct: 131 FEVYL-KPYFLEAYRPIRKGDIFLVRGGMRAVEFK 164
Score = 105 bits (251), Expect = 2e-22
Identities = 49/67 (73%), Positives = 63/67 (94%)
Frame = +1
Query: 55 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 234
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 235 RKETVCM 255
R+E VC+
Sbjct: 64 RREAVCI 70
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +1
Query: 514 GHARPSSSKVVETDPSPFCIVASDTGIH 597
G R KVVETDPSP+CIVA DT IH
Sbjct: 156 GGMRAVEFKVVETDPSPYCIVAPDTVIH 183
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 40.3 bits (90), Expect = 0.005
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 538 KVVETDPSPFCIVASDTGIH 597
KVVETDPSP+CIVA DT IH
Sbjct: 2 KVVETDPSPYCIVAPDTVIH 21
>BC004304-1|AAH04304.1| 320|Homo sapiens uroplakin 3B protein.
Length = 320
Score = 31.9 bits (69), Expect = 1.8
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 344 IHSSVSFSEIWKTSPHTAN**FKLR----GLTGNLFEVYLKPVLHGGLPSDPS*RHLHGR 511
IH ++ + W+ H + F R GL G+L+ L+PV+ GG P + R LHG+
Sbjct: 214 IHRHLARAAKWQHDRHYLHPLFSGRPPTLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQ 273
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,981,677
Number of Sequences: 237096
Number of extensions: 1985056
Number of successful extensions: 4294
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4282
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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