Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0317.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...    94   6e-20
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    89   3e-18
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    89   3e-18
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   5.8  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   7.7  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 42/95 (44%), Positives = 60/95 (63%)
 Frame = +3

Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
           ++SD++CP+EK+RM             DVVSI P P++ YG R+H+LPIDD+  G+   +
Sbjct: 77  IVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGLTGNL 136

Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
           +  +   PYF+EAYRP+H+ D F V  A   VEFK
Sbjct: 137 FDVFL-KPYFLEAYRPLHKGDIFTVQAAMRTVEFK 170



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 41/64 (64%), Positives = 55/64 (85%)
 Frame = +1

Query: 64  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 243
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 244 TVCM 255
           +V +
Sbjct: 73  SVAI 76



 Score = 34.3 bits (75), Expect = 0.067
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 538 KVVETDPSPFCIVASDTGIH 597
           KVVET+P+P CIV+ DT IH
Sbjct: 170 KVVETEPAPACIVSPDTMIH 189


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 40/62 (64%), Positives = 55/62 (88%)
 Frame = +1

Query: 64  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 243
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 244 TV 249
           TV
Sbjct: 73  TV 74



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 42/95 (44%), Positives = 58/95 (61%)
 Frame = +3

Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
           VL+ DNCP++KI+M             DVVSI+    ++YGKRVH+LPIDD+  G+   +
Sbjct: 77  VLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNL 135

Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
           +  +   PYF +AYRP+H+ D F V  A   VEFK
Sbjct: 136 FDVFL-RPYFTDAYRPVHKGDIFTVQAAMRTVEFK 169



 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 538 KVVETDPSPFCIVASDTGIH 597
           KVVETDP+P CIVA DT IH
Sbjct: 169 KVVETDPAPACIVAPDTVIH 188


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 40/62 (64%), Positives = 55/62 (88%)
 Frame = +1

Query: 64  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 243
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 244 TV 249
           TV
Sbjct: 73  TV 74



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 42/95 (44%), Positives = 58/95 (61%)
 Frame = +3

Query: 255 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSS*GVLLAI 434
           VL+ DNCP++KI+M             DVVSI+    ++YGKRVH+LPIDD+  G+   +
Sbjct: 77  VLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNL 135

Query: 435 YSKYT*SPYFMEAYRPIHRDDTFMVGGACAPVEFK 539
           +  +   PYF +AYRP+H+ D F V  A   VEFK
Sbjct: 136 FDVFL-RPYFTDAYRPVHKGDIFTVQAAMRTVEFK 169



 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 538 KVVETDPSPFCIVASDTGIH 597
           KVVETDP+P CIVA DT IH
Sbjct: 169 KVVETDPAPACIVAPDTVIH 188


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 43  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 192
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 43  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 192
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 53  WQIIKVLMIYRPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSKA 229
           W    +  + R RSS+  +DP +S S   S  T T S H      +   SS  T S +++
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRS 115

Query: 230 NAAR 241
            A R
Sbjct: 116 PANR 119


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 53  WQIIKVLMIYRPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSKA 229
           W    +  + R RSS+  +DP +S S   S  T T S H      +   SS  T S +++
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRS 115

Query: 230 NAAR 241
            A R
Sbjct: 116 PANR 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,297
Number of Sequences: 27780
Number of extensions: 311310
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)