Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0316.Seq
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 82 3e-17
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 31 0.11
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 5.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.3
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 25 7.3
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 7.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 7.3
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 7.3
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.3
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 24 9.7
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 82.2 bits (194), Expect = 3e-17
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = -2
Query: 260 QGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTP 90
+GK+V L FYPLDFTFVCPTEI+AFSE A +F + +V+ STDS ++HLA+INTP
Sbjct: 31 KGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINTP 87
Score = 50.8 bits (116), Expect = 1e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -3
Query: 349 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKG 254
M LQ+ KPAP FK TAVVNG F++I L+DYKG
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKG 32
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 30.7 bits (66), Expect = 0.11
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -3
Query: 385 FVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGNMLCCSSILW 224
F+Y K+++ + LQ + P + A +++ L DY+ ++LC ++ W
Sbjct: 599 FIYTRKLYALMQKELQHSNPQNELDALQIIHDSQ---GLLDYESSILCLQAVSW 649
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 373 SKVFSFNKMPLQMTKPAPQFKATAVVN 293
S +FSFN TKP+P +T N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 218 TFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFT 114
TF T + E DEF ++G +VLG D+ T
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIIT 590
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 442 GPPLEVDGIDKLDIEFAXAFVYYSK 368
GPPLEV+G ++ D+E F+ + K
Sbjct: 141 GPPLEVEGSEE-DVETDLHFICFVK 164
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 305 RGLELGSGFGHLQRHLVETKD 367
R L+LG+G GHL L+E +D
Sbjct: 67 RVLDLGTGNGHLLFRLLEEED 87
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 427 VDGIDKLDIEFAXAFVYYSKVFSFNKMPLQ 338
VDG++ + + A F +YS +F+ MP++
Sbjct: 2209 VDGVELVKMYEAKQFGFYSVIFADYHMPIR 2238
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 400 EFAXAFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNG---EFKDIS 272
E AF + + N P + PAPQFK V+N FK +S
Sbjct: 844 EHRAAFFQLLRAINLNCFPALLNIPAPQFK--LVINSIVWSFKHVS 887
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 26 KKIE*KIFPSTCSIYCV 76
+KI+ IFP C +YC+
Sbjct: 59 RKIDCTIFPVMCLVYCI 75
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 24.2 bits (50), Expect = 9.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 254 KYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDS 123
K +V+F YP T C + F + + + EVLG S D+
Sbjct: 74 KGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDT 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,050
Number of Sequences: 5004
Number of extensions: 22564
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -