Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0316.Seq
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...    76   1e-14
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    51   4e-07
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080     49   2e-06
06_01_0671 - 4899611-4899829,4900870-4901448                           46   1e-05
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700...    38   0.003
06_03_0754 + 24190778-24191284,24191735-24191784,24192311-241923...    29   2.4  
09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426     27   7.3  

>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 32/44 (72%), Positives = 37/44 (84%)
 Frame = -2

Query: 254 KYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDS 123
           KYV+LFFYPLDFTFVCPTEI AFS++ DEF K+  E+LG S DS
Sbjct: 99  KYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDS 142



 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 394 AXAFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKG 254
           A A  + ++    +  PL   K AP F A AV + EF ++ LSDY G
Sbjct: 52  ARASSFVARAGGVDDAPLVGNK-APDFDAEAVFDQEFINVKLSDYIG 97


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 25/51 (49%), Positives = 32/51 (62%)
 Frame = -2

Query: 251 YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWI 99
           YV+LF +P DFT VC TE+ A +  A EF K G ++LG S D   +H  WI
Sbjct: 67  YVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDWI 117


>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
          Length = 220

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = -2

Query: 251 YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWI 99
           YV++F +P DFT VC TE+   +  A EF K G ++LG S D   +H  WI
Sbjct: 32  YVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDWI 82


>06_01_0671 - 4899611-4899829,4900870-4901448
          Length = 265

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = -2

Query: 260 QGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTH 111
           +G+ VV++FYP D T  C  +  AF +  ++F+K G EV+G S D   +H
Sbjct: 143 KGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASH 192


>04_03_0889 +
           20568984-20569037,20569271-20569345,20569981-20570088,
           20572066-20572179,20572393-20572509
          Length = 155

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 215 FVCPTEIIAFSEKADEFRKIGCEVLGASTDS 123
           FV   EI AFS++ +EF KI  EVLG S DS
Sbjct: 48  FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78


>06_03_0754 +
           24190778-24191284,24191735-24191784,24192311-24192383,
           24192577-24192717,24193635-24194039,24194215-24194319,
           24194635-24194775,24195330-24195533,24196206-24196292,
           24196689-24196800,24197972-24198015
          Length = 622

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 245 QHISLVVRQRNVLELSVDDGRGLELGSGFGHLQ 343
           +H+SL   Q+N+ EL +DD R  EL S   H Q
Sbjct: 571 KHVSLEDIQKNIRELELDDTRKKELASAL-HAQ 602


>09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426
          Length = 482

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 173 DEFRKIGCEVLGASTDSHFTHLAWINT 93
           D  + I  +++GA+TD+ F  L WI T
Sbjct: 272 DNVKAIIKDIMGAATDTSFVTLEWIMT 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,536,037
Number of Sequences: 37544
Number of extensions: 150680
Number of successful extensions: 444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)