Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0316.Seq
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...    99   8e-22
U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   100   1e-21
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    48   4e-06
AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =   99 bits (238), Expect = 8e-22
 Identities = 39/57 (68%), Positives = 51/57 (89%)
 Frame = -2

Query: 260 QGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTP 90
           +GK++V+FFYPLDFTFVCPTEIIA+ ++A+EFR +G EV+  S DSHF+HLAW+NTP
Sbjct: 61  KGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTP 117



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = -3

Query: 346 PLQMTKPAPQFKATAVVNGEFKDISLSDYKGNML 245
           PL      P FK TAVV+G+FK IS  DYKG  L
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWL 65


>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 44/57 (77%), Positives = 50/57 (87%)
 Frame = -2

Query: 260 QGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTP 90
           +GKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I   VL ASTDS F+HLAWIN P
Sbjct: 32  KGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAINTVVLAASTDSVFSHLAWINQP 88



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = -3

Query: 331 KPAPQFKATAVVNGEFKDISLSDYKG 254
           KPAPQFK  AVV+GEF D+SLSDYKG
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKG 33


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 22/51 (43%), Positives = 31/51 (60%)
 Frame = -2

Query: 254 KYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 102
           ++++LF +P DFT VC TE+    + A EFRK   ++L  S DS  TH  W
Sbjct: 29  QWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDW 79


>AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.11 protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 82  VLCGVLIQARCVKCESVEA-PSTSQPILRNSSAFSENAMISVGHTNV 219
           +L  +L+    +    V A PS S   L +   F+E A I V HTN+
Sbjct: 3   LLLFILLNTTLLSTNYVHARPSVSHTTLASQFKFAEKADIFVTHTNI 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,225,559
Number of Sequences: 27780
Number of extensions: 131908
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)