Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0316.Seq
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   2.8  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   2.8  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   3.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.5  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 185 SEKADEFRKIGCEVLGASTDSHFTHL 108
           +E+ +E+R + CE +  S +S  TH+
Sbjct: 30  AERQEEYRCVICERVYCSRNSLMTHI 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 307  TAVVNGEFKDISLSDY 260
            T +++  FKD+ LSD+
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 248 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 141
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 248 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 141
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 206 PTEIIAFSEKADEFRKIGCEVL 141
           P E     E+AD  R++ C++L
Sbjct: 3   PLEHFENEERADRHRRVTCDLL 24


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 303 AVALNWGAGLVICR 344
           A+ ++W AG V+CR
Sbjct: 99  AITVSWKAGDVMCR 112


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 52 WKYFLFNFFS 23
          WKYF +NF S
Sbjct: 38 WKYFDYNFGS 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,563
Number of Sequences: 438
Number of extensions: 1439
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)