Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0316.Seq
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat... 91 3e-19
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)... 90 6e-19
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 50 8e-07
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 48 3e-06
At1g80910.1 68414.m09493 expressed protein 33 0.070
At1g16020.2 68414.m01922 expressed protein 32 0.21
At1g16020.1 68414.m01921 expressed protein 32 0.21
At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containi... 29 2.0
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 4.6
At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t... 27 6.1
At1g20240.1 68414.m02528 hypothetical protein 27 6.1
At4g03820.2 68417.m00529 expressed protein 27 8.1
At4g03820.1 68417.m00528 expressed protein 27 8.1
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe... 27 8.1
At2g43350.1 68415.m05390 glutathione peroxidase, putative 27 8.1
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 27 8.1
>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
very strong similarity to SP|Q96291 2-cys peroxiredoxin
BAS1, chloroplast precursor {Arabidopsis thaliana};
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 273
Score = 91.1 bits (216), Expect = 3e-19
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = -2
Query: 254 KYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINT 93
KYV+LFFYPLDFTFVCPTEI AFS++ +EF K+ EVLG S DS F+HLAW+ T
Sbjct: 111 KYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQT 164
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 349 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKG 254
+PL K AP F+A AV + EF + LS+Y G
Sbjct: 79 LPLVGNK-APDFEAEAVFDQEFIKVKLSEYIG 109
>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
identical to SP|Q96291 2-cys peroxiredoxin BAS1,
chloroplast precursor {Arabidopsis thaliana}; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 266
Score = 90.2 bits (214), Expect = 6e-19
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = -2
Query: 254 KYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINT 93
KYV+LFFYPLDFTFVCPTEI AFS++ EF K+ EVLG S DS F+HLAW+ T
Sbjct: 104 KYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQT 157
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 349 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKG 254
+PL K AP F+A AV + EF + LSDY G
Sbjct: 72 LPLVGNK-APDFEAEAVFDQEFIKVKLSDYIG 102
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 50.0 bits (114), Expect = 8e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = -2
Query: 260 QGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 102
+GK VVL+FYP D T C + AF + ++F+K G EV+G S D +H A+
Sbjct: 94 KGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSASHKAF 146
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 48.0 bits (109), Expect = 3e-06
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = -2
Query: 251 YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWI 99
+ VLF +P DFT VC TE+ A ++ A EF K G ++LG S D +H WI
Sbjct: 32 WTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHKDWI 82
>At1g80910.1 68414.m09493 expressed protein
Length = 497
Score = 33.5 bits (73), Expect = 0.070
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -2
Query: 245 VLFFYPLDFTFVCPTEIIAFSEKADEFRKI-----GCEVLGASTDSH 120
+LFFYP D TF +I SE F ++ CEV+ A SH
Sbjct: 33 ILFFYPPDLTFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 79
>At1g16020.2 68414.m01922 expressed protein
Length = 502
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -2
Query: 245 VLFFYPLDFTFVCPTEIIAFSEKADEFRKI-----GCEVLGASTDSH 120
+LFFYP D F +I SE F ++ CEV+ A SH
Sbjct: 31 ILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 77
>At1g16020.1 68414.m01921 expressed protein
Length = 515
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -2
Query: 245 VLFFYPLDFTFVCPTEIIAFSEKADEFRKI-----GCEVLGASTDSH 120
+LFFYP D F +I SE F ++ CEV+ A SH
Sbjct: 31 ILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 77
>At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 659
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 209 CPTEIIAFSEKADEFRKIGC--EVLGASTDSHFTHLAWINTPHNTILH 72
CP I+ ++E D K E G + + + W ++ +NT+LH
Sbjct: 489 CPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLH 536
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 304 AVVNGEFKDISLSDYKGNMLCCSSI 230
A++N EFK IS S K ++CC S+
Sbjct: 47 AIMNEEFKHISFSYNKLVLICCVSL 71
>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
Length = 902
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 227 KDRRTAQHISLVVRQR--NVL-ELSVDDGRGLELGSGFGHLQRHLVE 358
+D R + LVV R N+ EL +DDG L +G+G G+ LV+
Sbjct: 760 RDARKTPYQLLVVASRLENISGELFLDDGENLRMGAGGGNRDWTLVK 806
>At1g20240.1 68414.m02528 hypothetical protein
Length = 566
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 222 VQRIEEQHNIFPL*SDREMSLNSPLTTAVALNWGAGLVICRGIL 353
V+ +E+H + +D+ + LN+ L + N+GA + C+ ++
Sbjct: 209 VEEDDEKHKVVVASNDQHIYLNAVLGVIDSTNYGATYIFCQPLV 252
>At4g03820.2 68417.m00529 expressed protein
Length = 453
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 239 TAQHISLVVRQRNVLELSVDDGRG 310
T QH ++ R+RNV++ S DD G
Sbjct: 343 TTQHSQILSRRRNVVQSSDDDEEG 366
>At4g03820.1 68417.m00528 expressed protein
Length = 437
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 239 TAQHISLVVRQRNVLELSVDDGRG 310
T QH ++ R+RNV++ S DD G
Sbjct: 343 TTQHSQILSRRRNVVQSSDDDEEG 366
>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
specific antioxidant (AhpC/TSA)/mal allergen family
protein identical to SP|Q9M7T0 Putative peroxiredoxin,
mitochondrial precursor {Arabidopsis thaliana}; similar
to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 201
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -2
Query: 260 QGKYVVLFFYPLDFTFVCPTE-IIAFSEKADEFRKIGCE-VLGASTDSHFTHLAW 102
+GK VV+F P +T VC + + ++ D+F+ G + V+ S + F W
Sbjct: 72 KGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGW 126
>At2g43350.1 68415.m05390 glutathione peroxidase, putative
Length = 206
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -3
Query: 418 IDKLDIEFAXAFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGNML 245
I K + AFV+Y ++ + P + + + +V + E KD+SLS + G +L
Sbjct: 16 IKKFILFLGVAFVFY--LYRYPSSPSTVEQSSTSIYNISVKDIEGKDVSLSKFTGKVL 71
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 106 ARCVKCESVEAPSTSQPILRNSSAFSENAMISVGHTNVKSKG 231
++C K + + A S P +N+SAF E A+ + N+ +G
Sbjct: 777 SKCFKEDELRAWSEPLPRNKNASAFDELAIFTTPERNLMLRG 818
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,592,715
Number of Sequences: 28952
Number of extensions: 121229
Number of successful extensions: 366
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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