Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0315.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   7.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 273 RTPQSKFEETYYYIKAQVPVSAGKRPNTNR 184
           +   SK +  YYY      +  GKRP   R
Sbjct: 231 KNDSSKKKTRYYYRSVDDVIEKGKRPGAFR 260


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/35 (20%), Positives = 22/35 (62%)
 Frame = +3

Query: 63  CVVRQNLL*ISKLFIENCNVIFISVLGYKEIIVIM 167
           C++ +NL+  +   + N ++  IS+   K++++++
Sbjct: 258 CIIAKNLMSNAATLVLNKHIDNISLRARKQVVLML 292


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 417 ISLSDGIYECLDN*HTRHGLMTDTIANPGALVT 319
           +S     Y CL    T+  +++DT+ N   +VT
Sbjct: 183 VSTDAFFYTCLIQIETQCEIVSDTLRNLDKIVT 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,090
Number of Sequences: 336
Number of extensions: 2719
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)