Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0315.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    28   1.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.4  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   8.4  

>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 45  MNKYASCVVRQNLL*ISKLFIENCNVIFISVLGYKEII 158
           MNK    V+ + +  +S L    C +IFI VL YK ++
Sbjct: 61  MNKVEKYVIPETMGAVSALVYFMCMIIFIPVLFYKYLV 98


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 354  SSVRDACANCQDIHRFHHLEIYSNPPYNAVYWFRVKWILPDNTFYD 491
            +S+R  C N   ++    L  ++  P+ A YW  + + +  +T YD
Sbjct: 1736 NSIRKTCMNIL-LYLRRQLGHHALNPFEANYWVPINYSVAASTAYD 1780


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 533 LNADQSFIRNALYEVVKRVIR*YPFHAEPIYRVIGGVTIYL 411
           LN D+  I ++  EV KRV R        +YR   G  IY+
Sbjct: 268 LNEDEELISSSPSEVGKRVFRLIDLSTGNVYRRDTGGDIYV 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,598
Number of Sequences: 5004
Number of extensions: 44780
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)