Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0315.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   0.98 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.98 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 477 YPVISISRGTNIPRYRGGYYISL 409
           YP   +S   N P+ RG +Y  L
Sbjct: 239 YPPFMLSNSLNFPQIRGEFYFFL 261


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 477 YPVISISRGTNIPRYRGGYYISL 409
           YP   +S   N P+ RG +Y  L
Sbjct: 239 YPPFMLSNSLNFPQIRGEFYFFL 261


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 361 TDDRYNSKPRCLSNRNR 311
           T  RY+ + RC  +RNR
Sbjct: 227 TSSRYSRERRCSRDRNR 243


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 357  MTDTIANPGALVTEIDIITSLRRVGHR*RTP 265
            MT+  A+P    T +  ++S RR   + +TP
Sbjct: 1747 MTEGCASPPPAATSMKSVSSRRRQQRKQQTP 1777


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 357  MTDTIANPGALVTEIDIITSLRRVGHR*RTP 265
            MT+  A+P    T +  ++S RR   + +TP
Sbjct: 1743 MTEGCASPPPAATSMKSVSSRRRQQRKQQTP 1773


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,784
Number of Sequences: 438
Number of extensions: 3268
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)