Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0314.Seq
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.60 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   5.6  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   7.3  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 111 WINEIPTVPI 140
           W+NEIPT+P+
Sbjct: 321 WLNEIPTMPV 330


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 280 SSLKNHYFHCFITYSVGRK 336
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 355 YYRPRTASAQPSK 317
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 487 HLQRITXGXKASSARTEPXVEQK 555
           HLQ +     A SA T+P V  K
Sbjct: 87  HLQNLQRQQAAMSAATDPSVVSK 109


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 84  RHLISDAHEWINEI 125
           RHLI    +W NE+
Sbjct: 91  RHLIDHKRDWWNEL 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,711
Number of Sequences: 336
Number of extensions: 2428
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)