Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0314.Seq
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    29   0.36 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   4.4  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   7.7  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 267 ISHLSTPLMSPYNARLESSSTGSSFPADSP 178
           +SH ST L  PYN    SSS+ SS  + SP
Sbjct: 81  VSHSSTILNEPYNESPSSSSSDSSSRSTSP 110


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 298  SGFSATIARNDLPLIYTSHVSLQCQTRVKLNRVFFPR*FSQARSLGCGFAR 146
            + FS  + R    +IYT H  L+ Q  V   R FF    + A +L   F R
Sbjct: 2068 AAFSRFLHRVSFSVIYTKHNDLRLQETVHSTRAFFEDLDTHADTLTFDFPR 2118


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 333 PPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKP 172
           PPN  +   M   +FQ  +  T+ + S   ++   +  E+SS  S+F  D  KP
Sbjct: 103 PPNPATRSYMLTQLFQINTHGTVVNSSHETIASATSLFENSS--SNFSEDPNKP 154


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 255 STPLMSPYNARLESSSTGSSFPADSPK 175
           ST    PY A  + ++TGSSF AD  K
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK 277


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 476 VKLPAXQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 345
           + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 154 IPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,281
Number of Sequences: 5004
Number of extensions: 43269
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)