Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0314.Seq
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.64
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.4
12_01_0843 + 7891622-7892524 28 4.5
09_06_0251 - 21859484-21862162 28 4.5
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 28 4.5
12_02_0077 - 13288916-13289659,13289689-13289691 28 6.0
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 28 6.0
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 28 6.0
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 28 6.0
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 6.0
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 27 7.9
03_01_0545 - 4086692-4087591 27 7.9
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 69 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 215
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 397 TTLHAWNETPCARRYY 350
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>12_01_0843 + 7891622-7892524
Length = 300
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -2
Query: 342 APLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPVPL 163
AP P V+ +T+ VV + E L SP SSS+G + SP P P
Sbjct: 66 APAPAPSVAGKTVPKVVGDCKEMEREKEKEKSLSSP-----SSSSSGMTSVESSPPPPPS 120
Query: 162 AVVSL 148
A++ L
Sbjct: 121 AMLPL 125
>09_06_0251 - 21859484-21862162
Length = 892
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -2
Query: 342 APLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPVP 166
APLPP + +F + + H+ P+ + +A + +G + P+ SP+PVP
Sbjct: 114 APLPP--------LLALFDPDTSSDLGHVFLPVSASASASNATDDSGVASPSPSPEPVP 164
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 357 DIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSS 196
DI+D PLP S K++ +RR+ +S L+ P R++ S S
Sbjct: 86 DIVDAPPLPVLSFSPSKDKILFLKRRALPPLSDLAKPEEKLAGVRIDGYSNTRS 139
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 219 ESSSTGSSFPADSPKPVPLAVVSLDSR 139
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 288 QRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR 118
QR S E ++ TP + Y A SSS GSS P P+A++ + E R
Sbjct: 290 QRSSFEQKTNYQTPASALYGAYEGSSSQGSSSGYGEPPKDPVALMEFYMKKAAQEER 346
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 328 GRKRCAVD-NIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHXQAGSLTGA 483
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGA 92
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 479 PVKLPAXQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 357
P++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 249 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 142
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 361 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHXQAGSLTGA 483
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>03_01_0545 - 4086692-4087591
Length = 299
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -2
Query: 408 SATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYN 229
+AT+PL R PA + R LPP + + +R + S+P SP
Sbjct: 184 AATAPLMMTSPSPRTPAAAVARWDLPPRGRGVFVLSISPLRREISVSTEAPSSPEPSPQR 243
Query: 228 ARLESSS 208
R ++S
Sbjct: 244 HRHRAAS 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,453
Number of Sequences: 37544
Number of extensions: 327958
Number of successful extensions: 1136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -