Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0314.Seq
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 45 5e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_45187| Best HMM Match : Sulfolobus_pRN (HMM E-Value=0.95) 32 0.38
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 2.0
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_40420| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.1
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 6.1
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 28 6.1
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 6.1
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76) 28 6.1
SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18) 28 6.1
SB_45530| Best HMM Match : DnaB_C (HMM E-Value=0.89) 28 6.1
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 28 6.1
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.1
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 28 6.1
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 28 6.1
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 28 6.1
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 27 8.1
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 81.8 bits (193), Expect = 4e-16
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = -2
Query: 336 LPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPVPLAV 157
LP +R+S +T++VVVF RR STPLMS + RLESSSTGSSFPAD KPVPLAV
Sbjct: 67 LPLHRISKKTIRVVVFHRRIATPT--YSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAV 124
Query: 156 VSLDSR 139
VSLDSR
Sbjct: 125 VSLDSR 130
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +3
Query: 78 MPRHLISDAHEWINEIPTVPIYYLAKP 158
MPRHLISDAHEWINEIPTVPI +P
Sbjct: 1 MPRHLISDAHEWINEIPTVPIIEFLQP 27
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1
Query: 1 LNVNVKKFKQARVNGGSNYDSL 66
LNV VKKF QARVNGGSNYDSL
Sbjct: 30 LNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +1
Query: 1 LNVNVKKFKQARVNGGSNYDSL 66
LNV VKKF QARVNG SNYDSL
Sbjct: 3 LNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 1 LNVNVKKFKQARVNGGSNYDS 63
LNV VKKF QARVNGG +S
Sbjct: 34 LNVKVKKFNQARVNGGDPLES 54
>SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2
Query: 294 VFQRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPV 169
V R RE + LS+ L SPY L G P DSP+ V
Sbjct: 406 VSARIEREAVKPLSSRLPSPYRVNLPKIQCGRLAPVDSPRDV 447
>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = -2
Query: 378 TKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGS 199
+ + +P + +AP+PP R + ET+ + V Q + + ++++T + + T
Sbjct: 447 SSNASPVVMRRKAPVPP-RTTGETVPISVRQSVALPSSTNVATGSTFGHGVKSWQDETSP 505
Query: 198 SFPADSPKPVP 166
S A+SP P+P
Sbjct: 506 SDVAESPPPIP 516
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 31.9 bits (69), Expect = 0.38
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = -2
Query: 444 RITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETI 265
R+TRE T+ S S +K + A A + ET K +QR + E I
Sbjct: 1061 RVTRETQVKTTRSTRSKAAAPKSKKKPSAKSGSAAAI-------ETPKPTKYQRTALEPI 1113
Query: 264 SHLSTPLMSPYNARLESSSTGS 199
+ TP+ +P N RL S S
Sbjct: 1114 QEVPTPMTTPRNTRLRKDSVMS 1135
>SB_45187| Best HMM Match : Sulfolobus_pRN (HMM E-Value=0.95)
Length = 108
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -2
Query: 510 TXXYSLQMYRPSQTPRLXVSSNRI 439
T Y +M RPSQTP L VSS RI
Sbjct: 63 TREYGQKMCRPSQTPNLTVSSTRI 86
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 440 SRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 336
SRG + PPR R E N+V PP S R
Sbjct: 293 SRGKREENSVSPPRRSKGRREENSVSPPRRSKGRR 327
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = -2
Query: 381 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTG 202
G +H AP IID P +++ T KV V++ T S SP + SST
Sbjct: 747 GFEHNAPQPIIDEGP-DTSQLRPRTSKVAVWETAQATTQHSESVSETSP-----QLSSTA 800
Query: 201 SSFPADSP 178
P SP
Sbjct: 801 QQTPPHSP 808
>SB_40420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -3
Query: 488 CTAPVKLPAXQCPRTGSRGSFKRRRAFPPRHHSAR 384
C AP KLP QC R GS KR P R + R
Sbjct: 2 CAAPAKLPTWQCLRHGS--VCKRETLNPERDLAVR 34
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393
>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 381 GTKHRAPADIIDRAPLPPNRV 319
GT HR PA+ R +P NRV
Sbjct: 519 GTHHRVPAEATGRVDVPDNRV 539
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 363 PADIIDRAPLPPNRVSNETMKVVVFQRRSRETI 265
PA + +++PLP N ++E +++ QRR E +
Sbjct: 2409 PAKLPNQSPLPNNASASEIQRILENQRREEELL 2441
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 79 VFGRDFDIITDHKPLLSLFH 98
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
Length = 250
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 381 GTKHRAPADIIDRAPLPPNRV 319
GT HR PA+ R +P NRV
Sbjct: 225 GTHHRVPAEATGRVDVPDNRV 245
>SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18)
Length = 534
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 285 RRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPVPLAVV 154
R S E HL TPL ++ R TG F +SP P P V
Sbjct: 101 RISTEQGKHLDTPLEVLFHQRPGHHLTGHVFYQESPVPSPTQCV 144
>SB_45530| Best HMM Match : DnaB_C (HMM E-Value=0.89)
Length = 396
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 406 GNARRRLKLPRDPVRGHXQAGSLTGAVHLQRITXGXKASSAR 531
G RRR KLP + + +A ++T AV + G SSAR
Sbjct: 220 GRRRRRAKLPTQVRKKYKRAFAVTNAVSVASGIAGGALSSAR 261
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 255 ISGRSFRAIVAEKPLLSLFH 314
+ GR F I KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 84 RHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLTLVW 227
R++IS W N+I + YL P + + +Q+G+ L ++W
Sbjct: 755 RYVISGT--WDNKIEAAKVVYLKSPGVKAQGSSSQKGQPQTLPPVVLW 800
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,312,925
Number of Sequences: 59808
Number of extensions: 351912
Number of successful extensions: 912
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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