Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0314.Seq
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    30   1.0  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z32679-4|CAA83591.1|  315|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80836-12|AAB37889.1|  187|Caenorhabditis elegans Dj-1 (mammalia...    28   5.4  
Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    27   9.4  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -2

Query: 384 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPL 244
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+  PL
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIFPL 330


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 25/92 (27%), Positives = 36/92 (39%)
 Frame = -2

Query: 429 F*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLST 250
           F   T+VS  SP  T+ T    P  +      PP   +  T   V     S    ++L+T
Sbjct: 469 FYPVTTVSTMSPPTTV-TVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTT 527

Query: 249 PLMSPYNARLESSSTGSSFPADSPKPVPLAVV 154
           P  +P N    SS+T  + P +   P     V
Sbjct: 528 PTTAPVNP--TSSTTAPTAPVNPTSPTTAPTV 557


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -2

Query: 405  ATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNA 226
            +  P+ T  +   + A +I      P  +++E    V+ Q  + + I+HL+TP  SP + 
Sbjct: 1136 SADPIATPISSSISTATVIPIVAATPTNITSEP---VIVQPITAQVITHLATP--SPVSH 1190

Query: 225  RLESSSTGSS 196
             L S+S+ S+
Sbjct: 1191 SLSSNSSPSA 1200


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -2

Query: 405  ATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNA 226
            +  P+ T  +   + A +I      P  +++E    V+ Q  + + I+HL+TP  SP + 
Sbjct: 1136 SADPIATPISSSISTATVIPIVAATPTNITSEP---VIVQPITAQVITHLATP--SPVSH 1190

Query: 225  RLESSSTGSS 196
             L S+S+ S+
Sbjct: 1191 SLSSNSSPSA 1200


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 273  ETISHLSTPLMSPYNARLESSSTGSSFPADSPKP 172
            +TI+  S+   S  +   ESSSTGSS  +D P+P
Sbjct: 1435 KTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 273  ETISHLSTPLMSPYNARLESSSTGSSFPADSPKP 172
            +TI+  S+   S  +   ESSSTGSS  +D P+P
Sbjct: 1435 KTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z32679-4|CAA83591.1|  315|Caenorhabditis elegans Hypothetical
           protein C05B5.4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 288 QRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPV 169
           ++ SR  +S    P + PYN+R +   T    P D  +P+
Sbjct: 241 KKSSRRNVSVNVQPRLIPYNSRCDDYDTRYDMPWDQQRPL 280


>U80836-12|AAB37889.1|  187|Caenorhabditis elegans Dj-1 (mammalian
           transcriptionalregulator) related protein 1.1 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 403 GGNARRRLKLPRDPVRGHXQAGSLTGAV---HLQRITXGXKASSARTEPXVEQKGKK 564
           G N      L RD ++   ++G L GA+    +  ++ G KA    + P V++K +K
Sbjct: 78  GSNTLAESLLVRDVLKSQVESGGLIGAICAAPIALLSHGVKAELVTSHPSVKEKLEK 134


>Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical
           protein T08G3.7 protein.
          Length = 943

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = +3

Query: 138 IYYLAKPQPRERAW------ENQRGKKTLL 209
           +YY  KP   ER W      +NQ GK TLL
Sbjct: 589 LYYFGKPLDYERRWRYSLFLDNQDGKNTLL 618


>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
           protein F36D3.5 protein.
          Length = 1152

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = +3

Query: 138 IYYLAKPQPRERAW------ENQRGKKTLL 209
           +YY  KP   ER W      +NQ GK TLL
Sbjct: 790 LYYFGKPLDYERRWRYSLFLDNQGGKNTLL 819


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -3

Query: 467 PAXQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 336
           P    PR  +R S  RRR  PP     R +R   R P+     R
Sbjct: 222 PRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = +3

Query: 138 IYYLAKPQPRERAW------ENQRGKKTLL 209
           +YY  KP   ER W      +NQ GK TLL
Sbjct: 851 LYYFGKPLDYERRWRYSLFLDNQDGKNTLL 880


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 423 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 307
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 423 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 307
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
           protein R02F2.2 protein.
          Length = 1182

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 246 LMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR 118
           +++P +A    SST SS P   P+P   A VS  +R   + SR
Sbjct: 1   MLNPNDADDSDSSTDSSPPVAVPRPKRSATVSPSTRNSFYNSR 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,364,768
Number of Sequences: 27780
Number of extensions: 246763
Number of successful extensions: 750
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)