Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0314.Seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.7  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.9  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   4.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 261 HLSTPLMSPYNARLESSSTGSSFP 190
           H++  + SP   +   SSTGSS P
Sbjct: 345 HVAKQMASPEPPKSSESSTGSSIP 368


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 280 SSLKNHYFHCFITYSVGRK 336
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 259 VGDRFARSSLKNHYFHCFI 315
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 255 STPLMSPYNARLESSSTGSSFPA 187
           S+P  +P  A   SSST SS PA
Sbjct: 509 SSPSPNPRIASAPSSSTSSSPPA 531


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 259 VGDRFARSSLKNHYFHCFI 315
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 399 TWRKRSSPFKTPA*SGSRTLXGGEFDWG 482
           +WR   S F     +G   + G  F WG
Sbjct: 227 SWRITHSYFMPDPLAGDYNIGGLNFQWG 254


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 186 QRGKKTLLSLTLVWHCKE 239
           + G KTLLS T +W  ++
Sbjct: 231 KNGMKTLLSETDIWEVEQ 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,558
Number of Sequences: 438
Number of extensions: 3082
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)