Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0314.Seq
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    32   0.31 
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    30   0.94 
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    29   2.2  
At2g47390.1 68415.m05915 expressed protein                             29   2.9  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    28   3.8  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   5.0  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   6.6  
At3g11590.1 68416.m01416 expressed protein                             27   6.6  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   6.6  
At4g34740.1 68417.m04930 amidophosphoribosyltransferase / glutam...    27   8.7  
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si...    27   8.7  
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica...    27   8.7  

>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 348 DRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSS 196
           +RAPLP   V  E +  + F +R +ET       ++S  N +  +S  GS+
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKETQGTGRRQVLSTVNRQDANSDVGST 57


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -2

Query: 354 IIDRAPLPPNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPK 175
           +ID A        N    +VV     +     +++ + SP+N+ L   S  SS  +D   
Sbjct: 72  LIDFAGSGGGEGKNVGEDLVVLLYHLQHACKRIASLVASPFNSSLGKLSVNSSSGSDRDA 131

Query: 174 PVPLAVVSLD 145
           P PL +VS D
Sbjct: 132 PKPLDIVSND 141


>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 282 RSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 151
           RS   +SH S  + +    +  SSST SS  A SP P P   +S
Sbjct: 188 RSSPAVSHSSPVVAASSPVKAVSSSTASSPRAASPSPSPSPSIS 231


>At2g47390.1 68415.m05915 expressed protein
          Length = 961

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 423 TATSVSATSPLCTLGTKHRAPA----DIIDRAPLPPNRVSNETMKVVVFQRRSRETISHL 256
           +A++ +       +GT +R P     DI+D  P+P    S    K++  +RR+   ++ L
Sbjct: 93  SASATATEDDELAIGTGYRLPPPEIRDIVDAPPVPALSFSPHRDKILFLKRRALPPLADL 152

Query: 255 STP 247
           + P
Sbjct: 153 ARP 155


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
 Frame = -2

Query: 423 TATSVS-ATSPLCTLGTKHRAPADIIDRAPLPPNRVS-------NETMKVVVFQRRSRET 268
           ++++VS ATSP  ++  K  +P       P PP   S         T        +S  T
Sbjct: 189 SSSAVSPATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSST 248

Query: 267 ISHLSTPLMSPYNARL-ESSSTGSSFPADSPKPVP 166
           I   S P+ SP  +   +SSS  S+ P  SP   P
Sbjct: 249 IPPSSAPMTSPPGSMAPKSSSPVSNSPTVSPSLAP 283


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 399 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 262
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 387  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 292
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At3g11590.1 68416.m01416 expressed protein
          Length = 622

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 261 HLSTPLMSPYNARLESSSTGS 199
           HLS P  SP + R+E S TGS
Sbjct: 150 HLSDPSHSPVSERMERSGTGS 170


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 69  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 200
           G  +P + +SD +  INE+   P   +AK   +E   +   GK+
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112


>At4g34740.1 68417.m04930 amidophosphoribosyltransferase / glutamine
           phosphoribosylpyrophosphate amidotransferase /
           phosphoribosyldiphosphate 5-amidotransferase nearly
           identical to amidophosphoribosyltransferase [Arabidopsis
           thaliana] GI:469195; identical to cDNA
           amidophosphoribosyltransferase, partial cds GI:469194
          Length = 561

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -2

Query: 330 PNRVSNETMKVVVFQRRSRETISHLSTPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 151
           PN++SN         R  R    + S+   SP  A + SSS+  SFP     P+ L    
Sbjct: 17  PNKLSNNNNNNKP-HRFLRNPFLNPSSSSFSPLPASISSSSSSPSFPLRVSNPLTLLAAD 75

Query: 150 LD 145
            D
Sbjct: 76  ND 77


>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 429

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 423 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 298
           TA +   T+   T+G  +  PA I     L P+R++ + + +
Sbjct: 18  TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59


>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
           to aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:8574427; similar to mitochondrial aldehyde
           dehydrogenase [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; identical to cDNA aldehyde
           dehydrogenase AtALDH2a GI:20530140
          Length = 538

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +3

Query: 156 PQPRERAWENQRGKKTLLSLTLVWHCKE--T*EV*ISGRSFR-AIVAEKPLLS-LFHYLL 323
           P P+  A+E  R       L +  H +E  + E   +G+ ++ ++ AE P+ + LF Y  
Sbjct: 112 PWPKMSAYERSRVLLRFADL-VEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYA 170

Query: 324 GWAEAVRG 347
           GWA+ + G
Sbjct: 171 GWADKIHG 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,946,155
Number of Sequences: 28952
Number of extensions: 240727
Number of successful extensions: 626
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)