Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0313.Seq
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05770 Cluster: Lipooligosaccharide biosynthesis protei...    38   0.14 
UniRef50_A7TMN4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_Q7RWM9 Cluster: Palmitoyltransferase SWF1; n=5; Pezizom...    35   1.8  
UniRef50_UPI000049A038 Cluster: serine protease inhibitor; n=1; ...    34   3.1  
UniRef50_O25915 Cluster: Competence locus E; n=4; Helicobacter|R...    34   3.1  
UniRef50_Q58M35 Cluster: Putative uncharacterized protein; n=1; ...    33   4.1  
UniRef50_Q4XYU9 Cluster: Putative uncharacterized protein; n=3; ...    33   4.1  
UniRef50_A7F7B8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_A0KVB7 Cluster: Putative uncharacterized protein; n=8; ...    32   9.5  

>UniRef50_Q05770 Cluster: Lipooligosaccharide biosynthesis protein
           lpsA; n=2; Mannheimia haemolytica|Rep:
           Lipooligosaccharide biosynthesis protein lpsA -
           Pasteurella haemolytica (Mannheimia haemolytica)
          Length = 263

 Score = 38.3 bits (85), Expect = 0.14
 Identities = 18/69 (26%), Positives = 38/69 (55%)
 Frame = +3

Query: 135 WCIVFVENQEEIGLVEDEVWLGNHAFSLLFCGLFEVNTHMLSIWDIYPDLLHRPYRSRRS 314
           W +   +N + I + ED+++LGN+AF LL       NTH++ +  +  D ++R  ++ + 
Sbjct: 71  WHLAKQQNLDYICIFEDDIYLGNNAFELLKTNYIPENTHIVKLETLPFDRINRFNKTEKY 130

Query: 315 FSQKSLSRV 341
              + L ++
Sbjct: 131 ILNRRLFKL 139


>UniRef50_A7TMN4 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 429

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = -3

Query: 522 VIGXLLNDNEDLSVAFNKLRDPATLPYILTQTESKYLKLAVPIELTLRDSRDYVPEVKRA 343
           V+   +NDN   S  +  L+D   L   +  T S  LK     + TLRD RD+V E +  
Sbjct: 208 VVPTEVNDNIKKSEKYENLKDCKLL---IKLTNSDSLKNTFDSDKTLRDVRDWVDENRTD 264

Query: 342 GLLTEIFEKN 313
           G ++ +F +N
Sbjct: 265 GTVSYLFHRN 274


>UniRef50_Q7RWM9 Cluster: Palmitoyltransferase SWF1; n=5;
           Pezizomycotina|Rep: Palmitoyltransferase SWF1 -
           Neurospora crassa
          Length = 429

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 173 PYFFLILNKYNAPGFVGLITH*VLKKLSRFRTKFNVYIP--KCFDCCLIK 30
           PY FL L+ Y  PG +   TH  +++++R+   F ++ P   C  C L+K
Sbjct: 118 PYIFLYLSAYTDPGVINAKTH--VREMARYPYDFTLFHPGTSCETCHLLK 165


>UniRef50_UPI000049A038 Cluster: serine protease inhibitor; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: serine protease
           inhibitor - Entamoeba histolytica HM-1:IMSS
          Length = 371

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 191 DFIFNKPYFFLILNKYNAPGFVGLITH 111
           D I NKPYFF+I+ +   P F G ++H
Sbjct: 341 DVIINKPYFFVIIGEEQYPLFFGKVSH 367


>UniRef50_O25915 Cluster: Competence locus E; n=4; Helicobacter|Rep:
           Competence locus E - Helicobacter pylori (Campylobacter
           pylori)
          Length = 417

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 281 IRIYIPYAEHMRIDFEQPTEEQAESVVAEPDFIFNKPYFFLILNKYN 141
           I +Y+ Y  + ++DF +PT   A+ ++  P     K YF L L   N
Sbjct: 12  INLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKN 58


>UniRef50_Q58M35 Cluster: Putative uncharacterized protein; n=1;
           Cyanophage P-SSM2|Rep: Putative uncharacterized protein
           - Cyanophage P-SSM2
          Length = 196

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 549 FYFERWISVVIGXLLNDNEDLSVAFNKLRDP 457
           +YF  W+   +G   +D+E +S+AFN +R P
Sbjct: 154 YYFPSWLQHEVGSSKSDDERISIAFNLIRKP 184


>UniRef50_Q4XYU9 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1872

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -1

Query: 239 FEQPTEEQAESVVAEPDFIFNKPYFFLILNKYNAPGFVGLITH*VLKKLSRFRTKFNVYI 60
           F Q   ++   ++ +   I+ K  +F   N YN  G + L  H  +KK+ +F     V I
Sbjct: 373 FNQSKNDKNNILLTDKSCIYQKDLYFFCNNTYNISGNIFLFFHFNIKKIKKFYKILKVVI 432

Query: 59  PK 54
            K
Sbjct: 433 EK 434


>UniRef50_A7F7B8 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 683

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 195 LGNHAF--SLLFCGLFEVNTHMLSIWDI 272
           L N AF  SL+FCG+F V T +  +WDI
Sbjct: 537 LSNAAFLSSLMFCGIFSVPTALPQVWDI 564


>UniRef50_A0KVB7 Cluster: Putative uncharacterized protein; n=8;
           Gammaproteobacteria|Rep: Putative uncharacterized
           protein - Shewanella sp. (strain ANA-3)
          Length = 143

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 144 VFVENQEEIGLVEDEVWLGNHAFSLLFCGLFEVNTHMLSIWDIYPD 281
           V VE QE   + +  VW  N   +  FC +FE   H++S   +Y D
Sbjct: 78  VIVEGQEGGVMSDGTVWPDNKISTGRFCSVFEFTDHLISRMYVYVD 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,804,350
Number of Sequences: 1657284
Number of extensions: 10854206
Number of successful extensions: 26600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26599
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)