Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0313.Seq
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.2  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   8.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 376 ISQCQFDRNCELQVFRLGLSQDIRQRR 456
           + QC++  NCE+ ++     Q+ R ++
Sbjct: 221 VYQCKYGNNCEIDMYMRRKCQECRLKK 247


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 76  FVLNLDNFFKTQCVIR 123
           +VLN+++FF  +C I+
Sbjct: 341 YVLNMEHFFSVKCSIQ 356


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 214 ACSSVGCSKSI 246
           ACSS GCS+ +
Sbjct: 349 ACSSAGCSQKV 359


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 156 KPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 112 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 147


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 KPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTAS 409
           KP+   +  ++ SPA  TS T S E    N+  + S
Sbjct: 156 KPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -1

Query: 230 PTEEQAESVVAEPDFIFNKPYFFLILNKYNAPG 132
           P +    + ++ P  ++N P        Y+APG
Sbjct: 269 PMQRPKSASLSPPPHVYNPPDHIQQATPYSAPG 301


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 564 MPKNFRFPRIFPDPSST 614
           +P NF F ++   PSST
Sbjct: 52  LPANFSFGQVNSPPSST 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,237
Number of Sequences: 336
Number of extensions: 2761
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)