Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0313.Seq
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.54 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    28   0.94 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.2  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   5.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   6.6  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   8.8  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.8  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 26/100 (26%), Positives = 44/100 (44%)
 Frame = +2

Query: 293 TVSKPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTASFKYLDSV*VKIYGSVAGSRSL 472
           T S  S+  S  +  S     +GT    S NVNS+G +S +   +    I GS +   + 
Sbjct: 610 TTSSTSEIVSTPASNSNTGSLNGT---SSFNVNSVGPSSSQTTPTSSSSITGSQSLKETS 666

Query: 473 LKATLRSSLSFNXSPMTTEIHLSK*NWKDLDAQEFSISAY 592
             A + S++S+  S + +    +       D+Q FS + Y
Sbjct: 667 SPAYVSSTVSYTSSSVDSSSTYNSTGSSSSDSQSFSGTTY 706


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 239  FEQPTEEQAESVVAEPDFIFNKPYFFLILNK 147
            + +PT E+A++V+AE + + NKP  + +  K
Sbjct: 1074 YSRPTIEEAKTVLAESENLTNKPEEYTVAQK 1104


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -3

Query: 582 IENSWASRSFQFYFERWISVVIGXLLNDNEDLSVAFNKL 466
           ++ S + + F+ +  R  +V++  ++NDNE+++V   KL
Sbjct: 121 LKKSGSYKGFEAFVNRTFAVLLRIVVNDNEEMAVLALKL 159


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 FQLALLWAVRSQYAYAQHMGYIS 277
           F L     +  Q++Y+ HMGYIS
Sbjct: 207 FTLHCAVLIMKQFSYSHHMGYIS 229


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/50 (24%), Positives = 31/50 (62%)
 Frame = +1

Query: 274 ILIYCIDRIEAVEVFLKNLCQESGPFNFRYIIT*ISQCQFDRNCELQVFR 423
           +LI CI+++  ++V +KN   ++     + ++   ++CQFD+   +++F+
Sbjct: 143 VLIKCIEQLIQIKVCMKNEKMKNLMEQLKPLLQ--TECQFDKFLIVELFQ 190


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 396 IELTLRDSRDYVPEVKRAGLLTEIFEKNFDG 304
           + LT+     +V  V +AG+L   +E  +DG
Sbjct: 155 LSLTVAQRHPFVDTVTKAGILLNYWENAYDG 185


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = -3

Query: 594 KYAEIENSWASRSFQFY--FERWISVVIGXLLNDNEDLSVAFNKLRDPATLPYILTQTES 421
           KY+E+  ++     Q    + +  S + G +    E+   +F K    AT PYI + T  
Sbjct: 22  KYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKPSSKATRPYIPSYTRL 81

Query: 420 KYLKLAVPIELTLRDSRDYV 361
            Y    +PI      S D +
Sbjct: 82  TYSVPPLPIPPPSEQSLDTI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,335
Number of Sequences: 5004
Number of extensions: 48858
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)