Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0313.Seq
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0284 + 15770208-15770409,15770915-15771146,15771550-157717...    29   3.9  
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540...    28   6.8  
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    28   6.8  
01_01_0088 + 688792-691441,691629-693013                               28   6.8  
05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536...    27   9.0  

>11_04_0284 +
           15770208-15770409,15770915-15771146,15771550-15771743,
           15771858-15771991,15772204-15772435,15772487-15772682,
           15774964-15775002,15775969-15775987,15776131-15776274
          Length = 463

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 606 KGPGKYAEIENSWASRSFQFYFERWISVVIGXL--LNDNED 490
           +G    AE+   W  RSF  YF+  +   I  +  ++DNED
Sbjct: 398 RGKALQAEVVRPWEIRSFTIYFDPKMDARIAEMDPMDDNED 438


>02_01_0722 +
           5405550-5405810,5406654-5407399,5407575-5408046,
           5408129-5408296,5408301-5408418,5408845-5409056,
           5409165-5409287,5409395-5409880,5409976-5410401
          Length = 1003

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -3

Query: 522 VIGXLLNDNEDLSVAFNKLRDPATLPYILTQTESKYLKLAVPIELTLRDSRDYVPEVK 349
           VIG  +NDN  + V    +     L  I+   E+  L  A   +L  R SR +VP V+
Sbjct: 494 VIGGTVNDNGCIIVKVTHVGSETALSQIVQLVEAAQLARAPVQKLADRISRFFVPTVR 551


>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
            708462-708702,708783-708857,708932-709017,709451-709523,
            709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 594  KYAEIENSWASRSFQFYFERWISVVIGXLLNDNEDLSVAFNKLRDPATLPYILTQ-TESK 418
            K  +I N  +   F  Y  R I+ V+   LN+   L V F  +  P +LP   ++    +
Sbjct: 1068 KRVDIRNLRSVMIFGSYRSRRIANVVRDTLNEIRALRVLFIFMNSPHSLPDNFSKLVHLR 1127

Query: 417  YLKLAVP 397
            YLK+  P
Sbjct: 1128 YLKIGSP 1134


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 594 KYAEIENSWASRSFQFYFERWISVVIGXLLNDNEDLSVAFNKLRDPATLPYILTQ-TESK 418
           K  +I N  +   F  Y  R I+ V+   LN+   L V F  +  P +LP   ++    +
Sbjct: 624 KRVDIRNLRSVMIFGSYRSRRIANVVRDTLNEIRALRVLFIFMNSPHSLPDNFSKLVHLR 683

Query: 417 YLKLAVP 397
           YLK+  P
Sbjct: 684 YLKIGSP 690


>05_01_0599 +
           5368091-5368123,5368212-5368383,5369237-5369335,
           5369636-5369748,5369824-5369916,5370081-5370244,
           5370328-5370564,5370739-5370883,5370982-5371160,
           5371997-5372142,5372239-5372366,5372441-5372614,
           5372706-5372735,5373219-5373380,5373460-5373705,
           5373733-5373870,5373974-5374174,5374304-5374448,
           5374575-5374681,5374830-5374970,5375274-5375539,
           5375621-5375745,5375843-5376109,5376250-5376263
          Length = 1174

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 299 IRSMQ*IRIYIPYAEHMR-IDFEQPTEEQAESVVAEPDFIFNKPYFFLIL 153
           ++S   + +Y+  A  +  ID E P+E   + +++    +F K Y++L++
Sbjct: 754 VKSFLLLNMYLQLAWCLNAIDGENPSEASIDELLSRQSSLFEKLYYYLVV 803


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,654,481
Number of Sequences: 37544
Number of extensions: 277874
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)