Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0313.Seq
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8622| Best HMM Match : RVT_1 (HMM E-Value=1.8e-35)                  28   5.3  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        28   5.3  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  28   7.0  
SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_8622| Best HMM Match : RVT_1 (HMM E-Value=1.8e-35)
          Length = 308

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -2

Query: 280 SGYISHMLSICVLTSNSPQKSKL 212
           SG I+H+++ C+LTSN P+  K+
Sbjct: 14  SGPITHIINKCILTSNFPKLWKI 36


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -2

Query: 280 SGYISHMLSICVLTSNSPQKSKL 212
           SG I+H+++ C+LTSN P+  K+
Sbjct: 246 SGPITHIINKCILTSNFPKLWKI 268


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 546 YFERWISVVIGXLLNDNEDLSVAFNKLRDPATLPYILTQTES 421
           YFE   S +   L   N  + +   KLR+PAT P   T T+S
Sbjct: 428 YFESQCSTLAKELEQRNNTIIMLEAKLREPATSPSGWTDTQS 469


>SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 155 LNKYNAPGFVGLITH*VLKKLSRFRTK--FNVYIPKCFD 45
           L + + PG  GL +   LK+ SR+      N+Y+P  FD
Sbjct: 302 LERTDKPGISGLTSKEFLKEFSRYHPNGTANLYVPYAFD 340


>SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 225 CGLFEVNTHMLSIWD-IYPDLLHR 293
           CG F+V   + ++W+ IYP + HR
Sbjct: 268 CGEFQVENFIQNLWEVIYPSMSHR 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,809
Number of Sequences: 59808
Number of extensions: 340112
Number of successful extensions: 1425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)