Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0313.Seq
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 376 ISQCQFDRNCELQVFRLGLSQDIRQRR 456
           + QC++  NCE+ ++     Q+ R ++
Sbjct: 220 VYQCKYGNNCEIDMYMRRKCQECRLKK 246



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 242 DFEQPTEEQAESVVAEP 192
           ++EQP+EE  + +  +P
Sbjct: 348 EYEQPSEEDLKRITNQP 364


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 376 ISQCQFDRNCELQVFRLGLSQDIRQRR 456
           + QC++  NCE+ ++     Q+ R ++
Sbjct: 17  VYQCKYGNNCEIDMYMRRKCQECRLKK 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,363
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)