Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0313.Seq
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27260.1 68414.m03321 paired amphipathic helix repeat-contain...    32   0.35 
At1g01600.1 68414.m00077 cytochrome P450, putative similar to cy...    32   0.35 
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    30   1.4  
At4g00360.1 68417.m00050 cytochrome P450, putative                     29   2.5  
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    29   3.3  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    27   7.5  
At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containi...    27   10.0 

>At1g27260.1 68414.m03321 paired amphipathic helix repeat-containing
           protein low similarity to transcriptional repressor
           SIN3B [Mus musculus] GI:2921547; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 222

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 600 PGKYAEIENSWASRSFQFYFERWISVVIGXLLNDNEDLSVAFNKLRDPATLPYILTQTE- 424
           P KY +  +    R  +   +    V +  L+ D+ DL + FN L  PA     +T    
Sbjct: 19  PAKYRQFLSLLRDRRARRIDKATFFVGLVELIKDHLDLLLGFNALL-PARFQIPITPAGF 77

Query: 423 SKYLKLAVPIELTLRDSRDYVPEVKRA 343
              +  +VP E T+ D+  Y+  VKRA
Sbjct: 78  QNVVGRSVPPETTIEDATSYLNSVKRA 104


>At1g01600.1 68414.m00077 cytochrome P450, putative similar to
           cytochrome P450 GI:10442763 from [Triticum aestivum]
          Length = 554

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 582 IENSWASRSFQFYFERWISVVIGXLLNDNEDLSVAFN 472
           ++++W     +F  ERWIS + G  +N ++   VAFN
Sbjct: 419 MKSTWGEDCLEFNPERWISPIDGKFINHDQYRFVAFN 455


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 189 LHLQQALFLLDSQQIQCTRFRWPY 118
           L LQ A+ LLDS  ++ TRF W Y
Sbjct: 635 LQLQNAVKLLDSGAVRATRFLWRY 658


>At4g00360.1 68417.m00050 cytochrome P450, putative 
          Length = 553

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 582 IENSWASRSFQFYFERWISVVIGXLLNDNEDLSVAFN 472
           ++++W     +F  ERWIS   G  +N ++   VAFN
Sbjct: 417 MKSTWGEDCLEFKPERWISPDDGKFVNHDQYRFVAFN 453


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 522 VIGXLLNDNEDLSVAFNKLRDPATLPYILTQTESKYLKLAVPIELTLRDSRDYVPEV 352
           VIG  LN+N  L V   ++   + L  I+   ES  L  A   +L  R S+ +VP V
Sbjct: 514 VIGGTLNENGVLHVKVTRVGSESALAQIVRLVESAQLAKAPVQKLADRISKFFVPLV 570


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 405 AVPIELTLRDSRDYVPEVKRA 343
           +VP+E TL D+R Y+  VK A
Sbjct: 167 SVPLEKTLDDARSYIDSVKEA 187


>At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 825

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 201 NHAFSLLFCGLFEVN--THMLSIWD 269
           N+ +S+L CGLF +N     +  WD
Sbjct: 575 NYTYSILICGLFNMNKVEEAIQFWD 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,906
Number of Sequences: 28952
Number of extensions: 241260
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)