Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0312.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4GYI8 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  
UniRef50_UPI0001596899 Cluster: hypothetical protein LOC90120; n...    31   8.8  
UniRef50_Q4T320 Cluster: Chromosome undetermined SCAF10132, whol...    31   8.8  
UniRef50_Q0RGR9 Cluster: Putative acyl-CoA transferases/carnitin...    31   8.8  
UniRef50_A0CEB2 Cluster: Chromosome undetermined scaffold_170, w...    31   8.8  

>UniRef50_Q4GYI8 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 161

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 139 CRTTAGSCYGRTAASCRCCGC 77
           CRTT  SC       C CCGC
Sbjct: 45  CRTTVVSCTSAFTTDCYCCGC 65


>UniRef50_UPI0001596899 Cluster: hypothetical protein LOC90120; n=1;
           Homo sapiens|Rep: hypothetical protein LOC90120 - Homo
           sapiens
          Length = 135

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
 Frame = -2

Query: 169 SVLSTAC---RRGCRTTAGSCYGRTA--------ASCRCCGCSWAA 65
           S L+ AC   R G R    S Y   A        ASCRCC C WAA
Sbjct: 83  STLAAACSLRRSGVRWPPSSAYSTWAFASCCASSASCRCCCCCWAA 128


>UniRef50_Q4T320 Cluster: Chromosome undetermined SCAF10132, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF10132,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 695

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 2   GGD-QR-EGGANGGDGNCSNCQKGSP 73
           GGD QR EGG  GGDG  +  Q+G P
Sbjct: 279 GGDLQRPEGGGQGGDGGAAEAQRGGP 304


>UniRef50_Q0RGR9 Cluster: Putative acyl-CoA transferases/carnitine
           dehydratase; n=1; Frankia alni ACN14a|Rep: Putative
           acyl-CoA transferases/carnitine dehydratase - Frankia
           alni (strain ACN14a)
          Length = 790

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 154 ACRRGCRTTAGSCYGRTAASCRCCGCSWAAFLAVAA 47
           AC +G    A +     AA+CR  GC  AA LA AA
Sbjct: 642 ACAQGWVAMAATADSDVAAACRALGCGSAAQLAAAA 677


>UniRef50_A0CEB2 Cluster: Chromosome undetermined scaffold_170,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_170,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 776

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -2

Query: 172 GSVLSTACRRGCRTTAGS----CYGRTAASCRCCGCSWAAFLAVAAISISPICSTFS 14
           G+ LS   ++G +    S    C G +  +  C GCS   FL  A  ++S  C+T S
Sbjct: 537 GTCLSCPPQQGAKQQLSSQCNKCSGTSTTNISCAGCSQRYFLQSANSAVSATCATCS 593


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,111,865
Number of Sequences: 1657284
Number of extensions: 5794434
Number of successful extensions: 16884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16825
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)